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The map label for this gene is nusB

Identifier: 189026238

GI number: 189026238

Start: 1107802

End: 1108227

Strand: Reverse

Name: nusB

Synonym: TPASS_1015

Alternate gene names: 189026238

Gene position: 1108227-1107802 (Counterclockwise)

Preceding gene: 189026239

Following gene: 189026237

Centisome position: 97.26

GC content: 53.29

Gene sequence:

>426_bases
GTGAGTGAAGTATTCCCAAAGATAGGGAGGAGGCGCGCTCGGATTCTGGCTTTTCAGGCTCTCTTTGCCTGGGACGCGGC
GGGCATCACGCCGGAGACGTTAACTCAGTTTACTTGGTTGCGGAGAAACCCGCCTCCTTCTACCCAGGATTTGGGGTTTT
CCCGACTCCTCTTTCTCGGTACGCTCGAGCACCTGCGGGAAATTGACGGTTGTGTGAGTTCACGGTTGGAACACTGGGAT
TTTGTGCGTTTGAACAAGGTGGACAAGGCCATCCTGCGCCTAAGTGCGTATTCGCTACTCTTTCAAAAAGACATTCCCCC
CGTCGTCGTTATACACGAGGCGGTCAGTATCGCTCGGGATTTCGGTACGGACGACTCCTTCCGCTTTGTAAATGGTGTGC
TCGATAACATTGCTAAAAGTGCGTAG

Upstream 100 bases:

>100_bases
CGCTCGAGGACGCTATCCGGGAAGTGTCGGCGGAGCTGAGGAAGTCTGGTACCTATAAGGTATTCTTGGCTGACGCAGAG
CTCGGCAAGGTGCTCGACTG

Downstream 100 bases:

>100_bases
TAAGCGCCACCTCCTCTCTTACCTTGGAGTAGTTGGGGTGGGTATTGCTGGGCTATGCATCTATCGCTCCGTTTGGGGGA
GTCGGCCCTTTTTGGAGAGA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSEVFPKIGRRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREIDGCVSSRLEHWD
FVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRFVNGVLDNIAKSA

Sequences:

>Translated_141_residues
MSEVFPKIGRRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREIDGCVSSRLEHWD
FVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRFVNGVLDNIAKSA
>Mature_140_residues
SEVFPKIGRRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREIDGCVSSRLEHWDF
VRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRFVNGVLDNIAKSA

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=127, Percent_Identity=33.0708661417323, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_TREPA (O83979)

Other databases:

- EMBL:   AE000520
- PIR:   C71253
- RefSeq:   NP_219452.1
- ProteinModelPortal:   O83979
- SMR:   O83979
- GeneID:   2610856
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP1015
- NMPDR:   fig|243276.1.peg.1010
- TIGR:   TP_1015
- HOGENOM:   HBG734409
- OMA:   SDNSSRF
- ProtClustDB:   PRK00202
- BioCyc:   TPAL243276:TP_1015-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16015; Mature: 15883

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEVFPKIGRRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHH
TLEHLREIDGCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARD
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
FGTDDSFRFVNGVLDNIAKSA
CCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEVFPKIGRRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHH
TLEHLREIDGCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARD
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
FGTDDSFRFVNGVLDNIAKSA
CCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876