Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
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Accession | NC_010741 |
Length | 1,139,457 |
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The map label for this gene is yfcE [C]
Identifier: 189026160
GI number: 189026160
Start: 1020294
End: 1020929
Strand: Reverse
Name: yfcE [C]
Synonym: TPASS_0937
Alternate gene names: 189026160
Gene position: 1020929-1020294 (Counterclockwise)
Preceding gene: 189026161
Following gene: 189026159
Centisome position: 89.6
GC content: 53.62
Gene sequence:
>636_bases GTGAATACGCTTGAGATGACTGCACCGGGAGTGATAGGGGGTCGGGAGTCGATTGCCTCATTGCATATGCTGTCTTGTGC GCGTTTGTTGCTGGTTTCCGATACGCACGGCAGCGCGGAGGCCTTGACCGCGGTGGTAGATCAGTTTGGTTCTTGTGCAG ATGCCCTTCTTTTTGCAGGGGACGGGATTGGGGATGTGTTGTATCTCTGCCAAAGGGGACGACGTAATCGTGTGCTGAGG GAGCGTATTCCAGGTGTTATTTTTATGGTTGCAGGAAATTGTGATCGTGCTTCGCACATACCCTTATGTGGACGTATCCA GGTGGCAGATGTTACGCTCTTTCTAGCGCACGGTCACACCCATTCGGTGAATGTGAGCGATAGTGTGCTCGTTTCCCAAG CACTGCAGGCGTGTTGTAGTATTGCGGTGCATGGACATACCCACGTGCAAAGGGCGTGTGTAAGTAGCCGCGTGCTTATA ATCAATCCGGGTAGTCTCGAGCATGCGCGAGGAAGCTCGCACGCAGGATTTGCTCTGTTGCACGTAATGAATAGCGCACA CACACGCACGGTGTTCTACCGGACGCGGCGGCAGGGGCATAGATATCTTTTTGAGGAAACGGTGCCACGCGTGTAA
Upstream 100 bases:
>100_bases CCTACAATCATGTGTTGCTGTCAAAACGGGTAGAAACGTTCAGATTTGTGCGTTCGTATGGTGGCAGTCCGGGAAGGAGC GTACACGAAAGGGATAGAAT
Downstream 100 bases:
>100_bases ACTGTAGGTAGTTCTTGAAAATAACGAAGAGTTGGTTGCATATGTCTTACCCGGCAGTGCGTTGCATGCGAGGTTCACAC GGGTATCCAAAACGCGTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphoesterase; Metallophosphoesterase YsnB
Number of amino acids: Translated: 211; Mature: 211
Protein sequence:
>211_residues MNTLEMTAPGVIGGRESIASLHMLSCARLLLVSDTHGSAEALTAVVDQFGSCADALLFAGDGIGDVLYLCQRGRRNRVLR ERIPGVIFMVAGNCDRASHIPLCGRIQVADVTLFLAHGHTHSVNVSDSVLVSQALQACCSIAVHGHTHVQRACVSSRVLI INPGSLEHARGSSHAGFALLHVMNSAHTRTVFYRTRRQGHRYLFEETVPRV
Sequences:
>Translated_211_residues MNTLEMTAPGVIGGRESIASLHMLSCARLLLVSDTHGSAEALTAVVDQFGSCADALLFAGDGIGDVLYLCQRGRRNRVLR ERIPGVIFMVAGNCDRASHIPLCGRIQVADVTLFLAHGHTHSVNVSDSVLVSQALQACCSIAVHGHTHVQRACVSSRVLI INPGSLEHARGSSHAGFALLHVMNSAHTRTVFYRTRRQGHRYLFEETVPRV >Mature_211_residues MNTLEMTAPGVIGGRESIASLHMLSCARLLLVSDTHGSAEALTAVVDQFGSCADALLFAGDGIGDVLYLCQRGRRNRVLR ERIPGVIFMVAGNCDRASHIPLCGRIQVADVTLFLAHGHTHSVNVSDSVLVSQALQACCSIAVHGHTHVQRACVSSRVLI INPGSLEHARGSSHAGFALLHVMNSAHTRTVFYRTRRQGHRYLFEETVPRV
Specific function: Unknown
COG id: COG0622
COG function: function code R; Predicted phosphoesterase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22800; Mature: 22800
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLEMTAPGVIGGRESIASLHMLSCARLLLVSDTHGSAEALTAVVDQFGSCADALLFAG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCHHHHHHCCC DGIGDVLYLCQRGRRNRVLRERIPGVIFMVAGNCDRASHIPLCGRIQVADVTLFLAHGHT CCHHHHHHHHHCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCC HSVNVSDSVLVSQALQACCSIAVHGHTHVQRACVSSRVLIINPGSLEHARGSSHAGFALL EECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHH HVMNSAHTRTVFYRTRRQGHRYLFEETVPRV HHHHCCCHHHHHHHHHHCCCHHHHHHHCCCC >Mature Secondary Structure MNTLEMTAPGVIGGRESIASLHMLSCARLLLVSDTHGSAEALTAVVDQFGSCADALLFAG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCHHHHHHCCC DGIGDVLYLCQRGRRNRVLRERIPGVIFMVAGNCDRASHIPLCGRIQVADVTLFLAHGHT CCHHHHHHHHHCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCC HSVNVSDSVLVSQALQACCSIAVHGHTHVQRACVSSRVLIINPGSLEHARGSSHAGFALL EECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHH HVMNSAHTRTVFYRTRRQGHRYLFEETVPRV HHHHCCCHHHHHHHHHHCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA