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The map label for this gene is rimP

Identifier: 189026116

GI number: 189026116

Start: 973425

End: 973895

Strand: Reverse

Name: rimP

Synonym: TPASS_0893

Alternate gene names: 189026116

Gene position: 973895-973425 (Counterclockwise)

Preceding gene: 189026117

Following gene: 189026115

Centisome position: 85.47

GC content: 58.17

Gene sequence:

>471_bases
GTGAACTTCAGTCCTAATACGCTGGGATCCTTTGAAAGCTGCGCTGAGGTTGTGAGGTCGCTCGGGTGTGCCCTTGTCGA
TCTGCAGTGGAGCGTTTCCGCTGTTTCTCGGCGTGTGCAGCAGGCTCAGGGAAGGGCGCGTGCCGTTATTTACAGCGCAG
GGGGAGTGACGCTCGACGTGTGCGCGCGCGTTCATCGAATACTGGTGCCGCGCCTTCAGGCTCTCGGTGGTGTGCGCACT
GTTTTTCTTGAAGTCGGCTCCCCCGGGGAGCGGGTTATTCGCAACGCCGCGGAGTTTTCCATCTTTTTAGGGGAGACTGT
GAAGGTCTGGTTTTGCACGGGGCAGTTTCAGGTTGGGACTCTTGCGTTTGCGGATGAGACTTGCCTTACCCTGACCGCCG
GCGGAGTGCCCGTTACTATCCCGTATGTTCAGCTAACAAAAGCGCAGTTACATCCTGCAGTCCGCGCTTGA

Upstream 100 bases:

>100_bases
CCGAGGCCCGCGTAGTGTGTAGCGGGCGTATCCTCATTTTTGTGGGCCCTTGTGTGAGAGTTTTAAACATGCTAGAGTGA
GCCCCGCGAGGGGTGCGTGC

Downstream 100 bases:

>100_bases
AAGGGCTTTTGGTCTGCACCTTCGCCCAAAATCGCCTAAGGAGCCGCCTATGTTCGGCGTCAGTAACGATGACATTAGAA
AGTATGCGCAGGAGAAGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MNFSPNTLGSFESCAEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIYSAGGVTLDVCARVHRILVPRLQALGGVRT
VFLEVGSPGERVIRNAAEFSIFLGETVKVWFCTGQFQVGTLAFADETCLTLTAGGVPVTIPYVQLTKAQLHPAVRA

Sequences:

>Translated_156_residues
MNFSPNTLGSFESCAEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIYSAGGVTLDVCARVHRILVPRLQALGGVRT
VFLEVGSPGERVIRNAAEFSIFLGETVKVWFCTGQFQVGTLAFADETCLTLTAGGVPVTIPYVQLTKAQLHPAVRA
>Mature_156_residues
MNFSPNTLGSFESCAEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIYSAGGVTLDVCARVHRILVPRLQALGGVRT
VFLEVGSPGERVIRNAAEFSIFLGETVKVWFCTGQFQVGTLAFADETCLTLTAGGVPVTIPYVQLTKAQLHPAVRA

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_TREPA (O83863)

Other databases:

- EMBL:   AE000520
- PIR:   B71266
- RefSeq:   NP_219328.1
- ProteinModelPortal:   O83863
- SMR:   O83863
- IntAct:   O83863
- GeneID:   2611148
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0893
- NMPDR:   fig|243276.1.peg.887
- TIGR:   TP_0893
- HOGENOM:   HBG732149
- OMA:   ECEPLVE
- ProtClustDB:   PRK14637
- BioCyc:   TPAL243276:TP_0893-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 16708; Mature: 16708

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFSPNTLGSFESCAEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIYSAGGVTLDV
CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCHHHH
CARVHRILVPRLQALGGVRTVFLEVGSPGERVIRNAAEFSIFLGETVKVWFCTGQFQVGT
HHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHEEEEECCEEEEEEEECCEEEEE
LAFADETCLTLTAGGVPVTIPYVQLTKAQLHPAVRA
EEECCCCEEEEEECCCEEEEHHHEEHHHHCCCCCCC
>Mature Secondary Structure
MNFSPNTLGSFESCAEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIYSAGGVTLDV
CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCHHHH
CARVHRILVPRLQALGGVRTVFLEVGSPGERVIRNAAEFSIFLGETVKVWFCTGQFQVGT
HHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHEEEEECCEEEEEEEECCEEEEE
LAFADETCLTLTAGGVPVTIPYVQLTKAQLHPAVRA
EEECCCCEEEEEECCCEEEEHHHEEHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876