Click here to switch to the map view.

The map label for this gene is 189026056

Identifier: 189026056

GI number: 189026056

Start: 900719

End: 901534

Strand: Reverse

Name: 189026056

Synonym: TPASS_0832

Alternate gene names: NA

Gene position: 901534-900719 (Counterclockwise)

Preceding gene: 189026058

Following gene: 189026055

Centisome position: 79.12

GC content: 55.88

Gene sequence:

>816_bases
GTGTGCAGCATGTCTTGGAAAAGCTTTATAATTCCTGTACGATGGCGCTGTATGGCCGGGAAGGGGAAACACTCATCAGC
GGGGTTGCTGTTCTGGCTTGCGTTTTCCTTGTTAATGGCGGTGCTTTTCTTTCTCAATAGAAGAAATATTGACCGTGTGT
TTTCGAGCGCTGCAGTGCAAGGGATGTTCGGCAACCAGGATTCCATGCGCGTTTTTGACTCTGCACGTCGTTCTCAGGCC
GGCTCGGCTGTTGAAAGTGATGCTAAAGCCACGCTCCCTACGCAGGATGTGGCACAGCCGGACGCTCCTGTTGCAGGATC
CCCTGCGCCAGCTGACGCTGGTACCGAAGGGAAAGATGTCGGCACGGTTTCTGGGGCGCCCGGTTCTGCACAACAGTCCC
GCGCAATTACGCTGTGCTGGGTGCGCATTGATGCAGATGGAAAGATCACTCGTGAGGAGGTAGCTCGCACGCTTCCTCAT
TCGACGGTGCCGCTTTCGGATGCGTTGCGCGCATTGTTCCTTGGTCCGTCTGAGGCAGAAGCGGTGCGCGGACTGCGTAC
GCTCATCCCTGAAGGTACGCGACTGCGCTCTGCACGCGTGCAAGAAGGGGTGGCGGTGTTGGATCTGAGCGAGGAGTTTC
AGTTCAATCAGTATGGCATTGAGGGCTACTTGGCGCAGCTTTCGCAGGTGGTGTTCACGGCAGCTGCGTTTCCTACGGTG
CATGCGGTGCAGTTTTTGATTGAAGGACGGCGTACCGAATATCTCGGTTCAGAGGGAGTGTGGATCGGTGCACCGGTTTC
TAAGAGTTCGTTCTAA

Upstream 100 bases:

>100_bases
AAAGCAGGGCCAGTAACATGAATGCCATGCGCACGACCCAATATCGGCTGCTTTATTTTCTTTTTGCCTATATTTTTTGC
AAGGCGGGGATAAGGGACGT

Downstream 100 bases:

>100_bases
TAGCTTGGTATGAGGTGAGGCAGTGCAGGATCTGTGTGAGATGTGGCGGCACGCCGTCGCCCGGGTGCTTTCTCAACTGC
AGGGGCCTGCCGTTGAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: Germination Protein GerM; Spore Germination Protein-Like Protein

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MCSMSWKSFIIPVRWRCMAGKGKHSSAGLLFWLAFSLLMAVLFFLNRRNIDRVFSSAAVQGMFGNQDSMRVFDSARRSQA
GSAVESDAKATLPTQDVAQPDAPVAGSPAPADAGTEGKDVGTVSGAPGSAQQSRAITLCWVRIDADGKITREEVARTLPH
STVPLSDALRALFLGPSEAEAVRGLRTLIPEGTRLRSARVQEGVAVLDLSEEFQFNQYGIEGYLAQLSQVVFTAAAFPTV
HAVQFLIEGRRTEYLGSEGVWIGAPVSKSSF

Sequences:

>Translated_271_residues
MCSMSWKSFIIPVRWRCMAGKGKHSSAGLLFWLAFSLLMAVLFFLNRRNIDRVFSSAAVQGMFGNQDSMRVFDSARRSQA
GSAVESDAKATLPTQDVAQPDAPVAGSPAPADAGTEGKDVGTVSGAPGSAQQSRAITLCWVRIDADGKITREEVARTLPH
STVPLSDALRALFLGPSEAEAVRGLRTLIPEGTRLRSARVQEGVAVLDLSEEFQFNQYGIEGYLAQLSQVVFTAAAFPTV
HAVQFLIEGRRTEYLGSEGVWIGAPVSKSSF
>Mature_271_residues
MCSMSWKSFIIPVRWRCMAGKGKHSSAGLLFWLAFSLLMAVLFFLNRRNIDRVFSSAAVQGMFGNQDSMRVFDSARRSQA
GSAVESDAKATLPTQDVAQPDAPVAGSPAPADAGTEGKDVGTVSGAPGSAQQSRAITLCWVRIDADGKITREEVARTLPH
STVPLSDALRALFLGPSEAEAVRGLRTLIPEGTRLRSARVQEGVAVLDLSEEFQFNQYGIEGYLAQLSQVVFTAAAFPTV
HAVQFLIEGRRTEYLGSEGVWIGAPVSKSSF

Specific function: Unknown

COG id: COG5401

COG function: function code R; Spore germination protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29157; Mature: 29157

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCSMSWKSFIIPVRWRCMAGKGKHSSAGLLFWLAFSLLMAVLFFLNRRNIDRVFSSAAVQ
CCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GMFGNQDSMRVFDSARRSQAGSAVESDAKATLPTQDVAQPDAPVAGSPAPADAGTEGKDV
HCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
GTVSGAPGSAQQSRAITLCWVRIDADGKITREEVARTLPHSTVPLSDALRALFLGPSEAE
CCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHH
AVRGLRTLIPEGTRLRSARVQEGVAVLDLSEEFQFNQYGIEGYLAQLSQVVFTAAAFPTV
HHHHHHHHCCCCCHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
HAVQFLIEGRRTEYLGSEGVWIGAPVSKSSF
HHHHHHHHCCHHHCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MCSMSWKSFIIPVRWRCMAGKGKHSSAGLLFWLAFSLLMAVLFFLNRRNIDRVFSSAAVQ
CCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GMFGNQDSMRVFDSARRSQAGSAVESDAKATLPTQDVAQPDAPVAGSPAPADAGTEGKDV
HCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
GTVSGAPGSAQQSRAITLCWVRIDADGKITREEVARTLPHSTVPLSDALRALFLGPSEAE
CCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHH
AVRGLRTLIPEGTRLRSARVQEGVAVLDLSEEFQFNQYGIEGYLAQLSQVVFTAAAFPTV
HHHHHHHHCCCCCHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
HAVQFLIEGRRTEYLGSEGVWIGAPVSKSSF
HHHHHHHHCCHHHCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA