Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
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Accession | NC_010741 |
Length | 1,139,457 |
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The map label for this gene is 189026037
Identifier: 189026037
GI number: 189026037
Start: 882626
End: 883912
Strand: Reverse
Name: 189026037
Synonym: TPASS_0813
Alternate gene names: NA
Gene position: 883912-882626 (Counterclockwise)
Preceding gene: 189026040
Following gene: 189026036
Centisome position: 77.57
GC content: 55.01
Gene sequence:
>1287_bases ATGGGCGCGGCTACGACGGGGTTTCCCATAAAGGCTGCAGTCATACACTTCACCGCTCTTAGCAGACATGAACAGTATAT CGTCTCGCGCGCGCTGTGTGCTTTGCGCACGCAGCCTCGGCGTGCGCAGGTTGTACGCCGGCGCGTGTCTAATTTAAAAC GTCTGGTCCGTGCTATGCGTTCGTACTCAGGTGCAGATGGTGCGGACGTAGAAAGGTTTGGAAAGGGAACGGTGACAGAC CTGGCCGATGCAGGAAGGTTCCTCTTTTTACCTGCACGTGTGGCGCTTAGGCGTGGGTACCTGATTGCTAAAATCCAAAC CTTTGCGTTTCTTACGCAGGAGGTAACGCGGGTAGCTCTAGCTGAGTACCTGGTGCAGGAGTTGCGCCAGGTGCAGTTTG CACTCGTGTGTATGCTCATGACAGAGGATCTATACCTCTCTCTAATGGAGCAGGAGCACGTACCCGCGCGTTTGAAGACT GCTGTTACGCATGCGCTCGTAGCGCTGTGGGAACAGCGTCCGGATGAACGTGCGCGGCGCGCTACGTCGGCACTGCATCA GGTGTGGTGTGCACGGGAGCACTTGGCCCCTAGCTTTGGCTCAATGCTCGGTTCTAGTGAGTTGTTTTTGCTCTCGACAG AGCTAGACGAGATGTGGCGCGACTTTTTAGTGCAGCGCTTGAGCGAAGCAGGAGTTTGTACCGCACTAGAGGAGTTCCTG TTTGGTATTTCACATGAGCAGATCCAAGCCATTCGCTTGCAATTGCGTGCGCAGGGGGTTGCGGCACTGAGCCGTCAGGA AGCATACGCCCTGATCGGGGAAAAGGGCGGGGGAGAAAACACGCAGGCGCACGCATACCAGCGTGTAGCTGATCTGTGCT CCTTTTATAGGTCGTTTATAATACGCAAAAGAGATGCCCAGGCGCGACTACGCCTAAATATGCCTGGACCTGTACGAACC ATCGAAGAACACTACGTGGAGTACCTTTTTTTCCGTCAGGGGAAGCCTGTTTTGTACATTAACGTGCGAGCTGCGCCTTC TACAAAGAGTTTTCCTTTAGGAAAGGTGTGTCGCGTCGAGACAAGCGGTCAGCACCTACTGTTTTTTCATACTCCATCAC CCGAAGCGTCCCCACGCGCACCTGCGTGGAAAGCTGGGTGCGCAAAAAGCACACTATCTGAGGGTGCCGTATTCGTTCGG CTCCTTGTTTTACCCATACGGCGCAGTGCGCTTGCCCTTGCGTGTCTACGCGCACGTGTGCGTGCACCACGCACGGATGT TGCATAA
Upstream 100 bases:
>100_bases TGCGTGCGCCTGTCATTCTCAGCGGTTAGGCCCTTCCTTTCCCTTGGTTTGTAGGGAGGTCATTCTAGTAATTCGTGTCA GAATACATTAGACTCACGCC
Downstream 100 bases:
>100_bases GCACACAAACAAGATCCTCTGCGTACACCGCTTCTCCGCGCGCACCGAGTTGCATATGGCACGAGCTGCTGCAGGGGAGG AGATTACCGGTTTCTGTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MGAATTGFPIKAAVIHFTALSRHEQYIVSRALCALRTQPRRAQVVRRRVSNLKRLVRAMRSYSGADGADVERFGKGTVTD LADAGRFLFLPARVALRRGYLIAKIQTFAFLTQEVTRVALAEYLVQELRQVQFALVCMLMTEDLYLSLMEQEHVPARLKT AVTHALVALWEQRPDERARRATSALHQVWCAREHLAPSFGSMLGSSELFLLSTELDEMWRDFLVQRLSEAGVCTALEEFL FGISHEQIQAIRLQLRAQGVAALSRQEAYALIGEKGGGENTQAHAYQRVADLCSFYRSFIIRKRDAQARLRLNMPGPVRT IEEHYVEYLFFRQGKPVLYINVRAAPSTKSFPLGKVCRVETSGQHLLFFHTPSPEASPRAPAWKAGCAKSTLSEGAVFVR LLVLPIRRSALALACLRARVRAPRTDVA
Sequences:
>Translated_428_residues MGAATTGFPIKAAVIHFTALSRHEQYIVSRALCALRTQPRRAQVVRRRVSNLKRLVRAMRSYSGADGADVERFGKGTVTD LADAGRFLFLPARVALRRGYLIAKIQTFAFLTQEVTRVALAEYLVQELRQVQFALVCMLMTEDLYLSLMEQEHVPARLKT AVTHALVALWEQRPDERARRATSALHQVWCAREHLAPSFGSMLGSSELFLLSTELDEMWRDFLVQRLSEAGVCTALEEFL FGISHEQIQAIRLQLRAQGVAALSRQEAYALIGEKGGGENTQAHAYQRVADLCSFYRSFIIRKRDAQARLRLNMPGPVRT IEEHYVEYLFFRQGKPVLYINVRAAPSTKSFPLGKVCRVETSGQHLLFFHTPSPEASPRAPAWKAGCAKSTLSEGAVFVR LLVLPIRRSALALACLRARVRAPRTDVA >Mature_427_residues GAATTGFPIKAAVIHFTALSRHEQYIVSRALCALRTQPRRAQVVRRRVSNLKRLVRAMRSYSGADGADVERFGKGTVTDL ADAGRFLFLPARVALRRGYLIAKIQTFAFLTQEVTRVALAEYLVQELRQVQFALVCMLMTEDLYLSLMEQEHVPARLKTA VTHALVALWEQRPDERARRATSALHQVWCAREHLAPSFGSMLGSSELFLLSTELDEMWRDFLVQRLSEAGVCTALEEFLF GISHEQIQAIRLQLRAQGVAALSRQEAYALIGEKGGGENTQAHAYQRVADLCSFYRSFIIRKRDAQARLRLNMPGPVRTI EEHYVEYLFFRQGKPVLYINVRAAPSTKSFPLGKVCRVETSGQHLLFFHTPSPEASPRAPAWKAGCAKSTLSEGAVFVRL LVLPIRRSALALACLRARVRAPRTDVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y813_TREPA (O83789)
Other databases:
- EMBL: AE000520 - PIR: B71278 - RefSeq: NP_219249.1 - ProteinModelPortal: O83789 - IntAct: O83789 - GeneID: 2610886 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0813 - NMPDR: fig|243276.1.peg.808 - TIGR: TP_0813 - HOGENOM: HBG251071 - ProtClustDB: CLSK218877 - BioCyc: TPAL243276:TP_0813-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48023; Mature: 47892
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAATTGFPIKAAVIHFTALSRHEQYIVSRALCALRTQPRRAQVVRRRVSNLKRLVRAMR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH SYSGADGADVERFGKGTVTDLADAGRFLFLPARVALRRGYLIAKIQTFAFLTQEVTRVAL HCCCCCCCCHHHHCCCCHHHHHHCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AEYLVQELRQVQFALVCMLMTEDLYLSLMEQEHVPARLKTAVTHALVALWEQRPDERARR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH ATSALHQVWCAREHLAPSFGSMLGSSELFLLSTELDEMWRDFLVQRLSEAGVCTALEEFL HHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHH FGISHEQIQAIRLQLRAQGVAALSRQEAYALIGEKGGGENTQAHAYQRVADLCSFYRSFI HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHH IRKRDAQARLRLNMPGPVRTIEEHYVEYLFFRQGKPVLYINVRAAPSTKSFPLGKVCRVE HHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEEE TSGQHLLFFHTPSPEASPRAPAWKAGCAKSTLSEGAVFVRLLVLPIRRSALALACLRARV CCCCEEEEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAPRTDVA CCCCCCCC >Mature Secondary Structure GAATTGFPIKAAVIHFTALSRHEQYIVSRALCALRTQPRRAQVVRRRVSNLKRLVRAMR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH SYSGADGADVERFGKGTVTDLADAGRFLFLPARVALRRGYLIAKIQTFAFLTQEVTRVAL HCCCCCCCCHHHHCCCCHHHHHHCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AEYLVQELRQVQFALVCMLMTEDLYLSLMEQEHVPARLKTAVTHALVALWEQRPDERARR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH ATSALHQVWCAREHLAPSFGSMLGSSELFLLSTELDEMWRDFLVQRLSEAGVCTALEEFL HHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHH FGISHEQIQAIRLQLRAQGVAALSRQEAYALIGEKGGGENTQAHAYQRVADLCSFYRSFI HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHH IRKRDAQARLRLNMPGPVRTIEEHYVEYLFFRQGKPVLYINVRAAPSTKSFPLGKVCRVE HHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEEE TSGQHLLFFHTPSPEASPRAPAWKAGCAKSTLSEGAVFVRLLVLPIRRSALALACLRARV CCCCEEEEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAPRTDVA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876