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The map label for this gene is ytcJ [H]

Identifier: 188586518

GI number: 188586518

Start: 1997372

End: 1998934

Strand: Reverse

Name: ytcJ [H]

Synonym: Nther_1904

Alternate gene names: 188586518

Gene position: 1998934-1997372 (Counterclockwise)

Preceding gene: 188586519

Following gene: 188586517

Centisome position: 63.15

GC content: 36.6

Gene sequence:

>1563_bases
GTGCCTCAAAAGGCAGATTTAGTAATTAATAATGCAAAGGTAATTACTTTAAATGATTCCCATGATATCGAGCAAGGAGT
TACAATTAAAGACGGAAAAATTTTGATGACAGGAAATAATGAAGAACTTGACGAATTAATAGGCAATGAAACAGAAATCA
TGTCACTAGATGGAAAAACAGTGGTACCCGGGTTTATTGATTCCCATGTTCATTTTATGCAAACTGGAATGAACGAATTG
TTTTTGGATTATACAGAATTTACTAGCTTGGATGAGTTACTTAAAGACTTATCGAGTAAAATTGAAACTTCGAGCCCGGG
TACCTGGATTCGCGTAGCAAAATATGATGATGATAAATTAGCTGAGAAACGACCTCCCACTATAAAAGAATTAGATGAAG
TAGCACCTAACAATCCAATATGGATGAATAGAGTAGACTGCCATTCATGTATAATCAATAGTAAGGCCATGGAAATTTTG
GATTTAACCAATGAAGAATTAAAGAATTTGGAAGGTGTGGAACGAGATACAGACGGACAAGTCACAGGTAATATGCGAAA
TGTAGCAAATGGCGTAGTAAGGAAACTTGTTATGGATATGATTTCCGAAAAACAGCGACTACAAGCTATGGATTACGCAA
CAGACTTAGCTTTGAAGGCAGGAATAACTACTGTTCACAGTATGGAAGGTGGAAAATTATTTAGTGATCAAGATGTTGAT
ATTCTATTAAGGAAATGGGAAGAAAATCCCCTTTATATAGTAGTTTTCAACCAAACAACAGATGTTGGCAGAGTTGTCGA
TTTAGGTCTTGAACGAATTGGTGGCTGCATAATTCTCGATGGATCCTTTGGATCAAGAACGGCAGCTTTATTGGAACCAT
ACACCGATGACCAATCAACTAAAGGTGAGTTATATTACTCTCAACAAGAAATAGATGATTTTGTCATGAAAGCGCACAAA
CAAGGGATGCAAATTACAGTTCACGCTATAGGTGACAGGGCTATAGAACGAATTCTACAAGCATACGAAAAAGCTCAACA
ACAATATCCTAGACAGGACATTAGACACAGGATTGAACATGCAGAACTTATTAATCGAGAACAACTAGAAAGATGTCAGA
AAATAAATGTTACTTTATCAGTCCAACCTACTTTTGAATACTTTTGGGGCGGACCTGGAATGTATGGCACTAGATTGGGC
GAAGACAGAGCTAAAACAACTAATCCTTACAGGGATATAATTGACTCCGGCTGTTTATTAATTGGGGGTTCAGACAGTGA
TGTAACCCCCATGAATCCCTTATTAGGGATTCACGGAGCTGTAAATCATTCAAATTCTAAACAACGATTGACAGTAACTG
AGGCTTTAAAATTATTCACAATAAATGCCGCTAAGTCAGTTTACGAAGAAGATTTAAAAGGAAGTATAGAGCCGGGCAAG
TTAGCAAACTTGACCGTTTTAGAACAAGACATTTTGGAAATTTCCCACGAGAAATTAAAAGATGTTCAGGTTGAAAAAAC
AATAATCGATGGACAAGTTCATTACCAAAAGAATAACGACTAG

Upstream 100 bases:

>100_bases
GGATTTGACGCAGGTTTTGGTAAAGATACTTTACCCCCTGATGTTGCAACTTATATAGCTAAAAAGGTTGCCGGGGAAAT
TTAGGAGGGAGGAATTTTCT

Downstream 100 bases:

>100_bases
ACTCTCCACGTAAAAATTAGAGAACAGGCTAAAGCCTTAATTGAGGGTATAATTTCTTAAGGGGTACAATTTTTAAGGAA
GGTGGGATTTAACATGGAAA

Product: Amidohydrolase 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MPQKADLVINNAKVITLNDSHDIEQGVTIKDGKILMTGNNEELDELIGNETEIMSLDGKTVVPGFIDSHVHFMQTGMNEL
FLDYTEFTSLDELLKDLSSKIETSSPGTWIRVAKYDDDKLAEKRPPTIKELDEVAPNNPIWMNRVDCHSCIINSKAMEIL
DLTNEELKNLEGVERDTDGQVTGNMRNVANGVVRKLVMDMISEKQRLQAMDYATDLALKAGITTVHSMEGGKLFSDQDVD
ILLRKWEENPLYIVVFNQTTDVGRVVDLGLERIGGCIILDGSFGSRTAALLEPYTDDQSTKGELYYSQQEIDDFVMKAHK
QGMQITVHAIGDRAIERILQAYEKAQQQYPRQDIRHRIEHAELINREQLERCQKINVTLSVQPTFEYFWGGPGMYGTRLG
EDRAKTTNPYRDIIDSGCLLIGGSDSDVTPMNPLLGIHGAVNHSNSKQRLTVTEALKLFTINAAKSVYEEDLKGSIEPGK
LANLTVLEQDILEISHEKLKDVQVEKTIIDGQVHYQKNND

Sequences:

>Translated_520_residues
MPQKADLVINNAKVITLNDSHDIEQGVTIKDGKILMTGNNEELDELIGNETEIMSLDGKTVVPGFIDSHVHFMQTGMNEL
FLDYTEFTSLDELLKDLSSKIETSSPGTWIRVAKYDDDKLAEKRPPTIKELDEVAPNNPIWMNRVDCHSCIINSKAMEIL
DLTNEELKNLEGVERDTDGQVTGNMRNVANGVVRKLVMDMISEKQRLQAMDYATDLALKAGITTVHSMEGGKLFSDQDVD
ILLRKWEENPLYIVVFNQTTDVGRVVDLGLERIGGCIILDGSFGSRTAALLEPYTDDQSTKGELYYSQQEIDDFVMKAHK
QGMQITVHAIGDRAIERILQAYEKAQQQYPRQDIRHRIEHAELINREQLERCQKINVTLSVQPTFEYFWGGPGMYGTRLG
EDRAKTTNPYRDIIDSGCLLIGGSDSDVTPMNPLLGIHGAVNHSNSKQRLTVTEALKLFTINAAKSVYEEDLKGSIEPGK
LANLTVLEQDILEISHEKLKDVQVEKTIIDGQVHYQKNND
>Mature_519_residues
PQKADLVINNAKVITLNDSHDIEQGVTIKDGKILMTGNNEELDELIGNETEIMSLDGKTVVPGFIDSHVHFMQTGMNELF
LDYTEFTSLDELLKDLSSKIETSSPGTWIRVAKYDDDKLAEKRPPTIKELDEVAPNNPIWMNRVDCHSCIINSKAMEILD
LTNEELKNLEGVERDTDGQVTGNMRNVANGVVRKLVMDMISEKQRLQAMDYATDLALKAGITTVHSMEGGKLFSDQDVDI
LLRKWEENPLYIVVFNQTTDVGRVVDLGLERIGGCIILDGSFGSRTAALLEPYTDDQSTKGELYYSQQEIDDFVMKAHKQ
GMQITVHAIGDRAIERILQAYEKAQQQYPRQDIRHRIEHAELINREQLERCQKINVTLSVQPTFEYFWGGPGMYGTRLGE
DRAKTTNPYRDIIDSGCLLIGGSDSDVTPMNPLLGIHGAVNHSNSKQRLTVTEALKLFTINAAKSVYEEDLKGSIEPGKL
ANLTVLEQDILEISHEKLKDVQVEKTIIDGQVHYQKNND

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 58440; Mature: 58309

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQKADLVINNAKVITLNDSHDIEQGVTIKDGKILMTGNNEELDELIGNETEIMSLDGKT
CCCCCCEEEECEEEEEECCCCCHHCCCEEECCEEEEECCCHHHHHHHCCCCEEEEECCCE
VVPGFIDSHVHFMQTGMNELFLDYTEFTSLDELLKDLSSKIETSSPGTWIRVAKYDDDKL
ECCCHHHHHHHHHHHCHHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
AEKRPPTIKELDEVAPNNPIWMNRVDCHSCIINSKAMEILDLTNEELKNLEGVERDTDGQ
HHCCCCCHHHHHHHCCCCCEEECCCCHHHHHHCHHHHHHHHCCHHHHHHCCCCCCCCCCC
VTGNMRNVANGVVRKLVMDMISEKQRLQAMDYATDLALKAGITTVHSMEGGKLFSDQDVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCHH
ILLRKWEENPLYIVVFNQTTDVGRVVDLGLERIGGCIILDGSFGSRTAALLEPYTDDQST
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHCCCCCCCCCC
KGELYYSQQEIDDFVMKAHKQGMQITVHAIGDRAIERILQAYEKAQQQYPRQDIRHRIEH
CCCEEECHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AELINREQLERCQKINVTLSVQPTFEYFWGGPGMYGTRLGEDRAKTTNPYRDIIDSGCLL
HHHCCHHHHHHHHHCCEEEEEEECCCEECCCCCCCCCCCCCCHHCCCCHHHHHHHCCEEE
IGGSDSDVTPMNPLLGIHGAVNHSNSKQRLTVTEALKLFTINAAKSVYEEDLKGSIEPGK
EECCCCCCCCCCCHHHCCCCCCCCCCCCEEEHHHHHHHEEEHHHHHHHHHHHCCCCCCCC
LANLTVLEQDILEISHEKLKDVQVEKTIIDGQVHYQKNND
CCEEHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEECCCC
>Mature Secondary Structure 
PQKADLVINNAKVITLNDSHDIEQGVTIKDGKILMTGNNEELDELIGNETEIMSLDGKT
CCCCCEEEECEEEEEECCCCCHHCCCEEECCEEEEECCCHHHHHHHCCCCEEEEECCCE
VVPGFIDSHVHFMQTGMNELFLDYTEFTSLDELLKDLSSKIETSSPGTWIRVAKYDDDKL
ECCCHHHHHHHHHHHCHHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
AEKRPPTIKELDEVAPNNPIWMNRVDCHSCIINSKAMEILDLTNEELKNLEGVERDTDGQ
HHCCCCCHHHHHHHCCCCCEEECCCCHHHHHHCHHHHHHHHCCHHHHHHCCCCCCCCCCC
VTGNMRNVANGVVRKLVMDMISEKQRLQAMDYATDLALKAGITTVHSMEGGKLFSDQDVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCHH
ILLRKWEENPLYIVVFNQTTDVGRVVDLGLERIGGCIILDGSFGSRTAALLEPYTDDQST
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHCCCCCCCCCC
KGELYYSQQEIDDFVMKAHKQGMQITVHAIGDRAIERILQAYEKAQQQYPRQDIRHRIEH
CCCEEECHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AELINREQLERCQKINVTLSVQPTFEYFWGGPGMYGTRLGEDRAKTTNPYRDIIDSGCLL
HHHCCHHHHHHHHHCCEEEEEEECCCEECCCCCCCCCCCCCCHHCCCCHHHHHHHCCEEE
IGGSDSDVTPMNPLLGIHGAVNHSNSKQRLTVTEALKLFTINAAKSVYEEDLKGSIEPGK
EECCCCCCCCCCCHHHCCCCCCCCCCCCEEEHHHHHHHEEEHHHHHHHHHHHCCCCCCCC
LANLTVLEQDILEISHEKLKDVQVEKTIIDGQVHYQKNND
CCEEHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]