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The map label for this gene is nodV [H]

Identifier: 188586456

GI number: 188586456

Start: 1917341

End: 1918861

Strand: Reverse

Name: nodV [H]

Synonym: Nther_1841

Alternate gene names: 188586456

Gene position: 1918861-1917341 (Counterclockwise)

Preceding gene: 188586458

Following gene: 188586455

Centisome position: 60.62

GC content: 31.62

Gene sequence:

>1521_bases
GTGAGTGTAGAGAAAAATGGAACTTTTTGTTACTTAAAAAACAATAAGAAGCATCAAAATTTAACTGGAATATCTTTAGA
GGAACTTCGAGGAAAAACTCCTTATCAACTTTTTGAAAAAGAACAGGCAGACTATATAGTAAGTAAGTTTTTAACATGTT
GTCAGCTTAAAGATACAATTAACTTCCAAGAGAGTTTAGAATTCCCCACAGGTAAGGGTACTTTTCAGACAATCTTATCG
CCAATATTAAAAGACGGAGAAGTAGTTAGAATTGTGGGAATTGGACGTGACATTACAAATCAAAGACAAAGTCAGGAAGG
TTTATGGTCCAGTGAGAAAAAACTCAGTACATACCTTGATAAAGCACCTATTGGAGTATTTATTATCAATAGTCTAGGGA
ATTTTATTGAAATAAATCAAAAAATTTGTACAATGACGGGATATTCAAAGAAAGATTTACTGGAACTATCTCTTATAGAT
ATTACGACATCAGATAATTATAATTTTAATACAAAAGTATTTAACAATCTAATTAATGATGGTCAAGTAGATGAATTTTT
TGAAATTAACCATAAAAATGGAAATAAATTATGGTTACATTTTCAGGCTTCCAAAATTGATAATGACCAATATATCTGCT
TTGTTGGTGATATCACAAAATTAAAAGAATCAGAAAAGAGCTTGAAGAAAACTCGTAAAATCTTTAATCATTTCCTGGAT
GCTATTGAAGATGGGTTTTGGTATTGGGATATACAGACTGGAGAATTTTTTTTAAGTGACAATTTTTATTCTATGTTGGG
ATACGAGCCCAATGAATTGAAATTAAACTATAATGACTGGCATAAGTTAATCCATCCTGATGATTTAGAATCGGTAAAGA
AAGAGATTTCACAGAAACTTCTAAGGGAAAAAGAAGGGGCTAATATTGAATTTCGAGCAAAAACAAAATCGGGTAGCTAT
AAGTGGATTAATGGTAAAGGAAATGTAGTAGAGTTTGATAATAATAGAGTCCCTATAAAAGCAGCAGGTATTCAGATTGA
TATTAATGCAAGAAAAGAATACGAGGAATTATACAAATCAATTGTAAATGCAGCCAAAACAGTTTCCTTGATAGTTACTG
ATCTTAATGGGATTATCAGAGAGTTCAGTCCCGGAGCTGAAGCTATCTTTGGTTATACAAGGGATGAAATGATTGGTAAG
CATGTTAGAAAAATAATAGTGTCTTCTGATTTAAAGAAAATTCCAGACTTTTTAAACAAATTAAAGCGGGAACGAGAAGG
ATTTACCTTTGAAACTGAACGGATAAGAAAATCCGGTGAAAGATTTCCTGTTCGCCTGACACTGCAACCTTTATTCGATA
ATGAAGGTAATTTTCATGGTACTTTGGCAATCATTGTAGACATTTCAGATTTAAAAGAAACGGAGAAAAGACTTCGAAAG
AGTGAGCAGCGCTTTATACTCTTATTTCTCAAACTCCAGCAGTTATTTATTCATTTAAATTGGTTGATAATAGACCAATA
G

Upstream 100 bases:

>100_bases
TATTCCTGAGGTAACAGAAGAAGAGGAACATTATAGTAAAAGTGAGTTACTTGGGGAGTATGAAACCGTTTTTGAGCACT
CATATGATGCTATATTTTTT

Downstream 100 bases:

>100_bases
CAACTTATGTAAGCCAAAATATTAAAAATATTCTCGGTTATGATCCCGACAAATTTTTGGGAAAAATGGACTATTTTTGG
AAAAAATTAATCCACCCCGA

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSVEKNGTFCYLKNNKKHQNLTGISLEELRGKTPYQLFEKEQADYIVSKFLTCCQLKDTINFQESLEFPTGKGTFQTILS
PILKDGEVVRIVGIGRDITNQRQSQEGLWSSEKKLSTYLDKAPIGVFIINSLGNFIEINQKICTMTGYSKKDLLELSLID
ITTSDNYNFNTKVFNNLINDGQVDEFFEINHKNGNKLWLHFQASKIDNDQYICFVGDITKLKESEKSLKKTRKIFNHFLD
AIEDGFWYWDIQTGEFFLSDNFYSMLGYEPNELKLNYNDWHKLIHPDDLESVKKEISQKLLREKEGANIEFRAKTKSGSY
KWINGKGNVVEFDNNRVPIKAAGIQIDINARKEYEELYKSIVNAAKTVSLIVTDLNGIIREFSPGAEAIFGYTRDEMIGK
HVRKIIVSSDLKKIPDFLNKLKREREGFTFETERIRKSGERFPVRLTLQPLFDNEGNFHGTLAIIVDISDLKETEKRLRK
SEQRFILLFLKLQQLFIHLNWLIIDQ

Sequences:

>Translated_506_residues
MSVEKNGTFCYLKNNKKHQNLTGISLEELRGKTPYQLFEKEQADYIVSKFLTCCQLKDTINFQESLEFPTGKGTFQTILS
PILKDGEVVRIVGIGRDITNQRQSQEGLWSSEKKLSTYLDKAPIGVFIINSLGNFIEINQKICTMTGYSKKDLLELSLID
ITTSDNYNFNTKVFNNLINDGQVDEFFEINHKNGNKLWLHFQASKIDNDQYICFVGDITKLKESEKSLKKTRKIFNHFLD
AIEDGFWYWDIQTGEFFLSDNFYSMLGYEPNELKLNYNDWHKLIHPDDLESVKKEISQKLLREKEGANIEFRAKTKSGSY
KWINGKGNVVEFDNNRVPIKAAGIQIDINARKEYEELYKSIVNAAKTVSLIVTDLNGIIREFSPGAEAIFGYTRDEMIGK
HVRKIIVSSDLKKIPDFLNKLKREREGFTFETERIRKSGERFPVRLTLQPLFDNEGNFHGTLAIIVDISDLKETEKRLRK
SEQRFILLFLKLQQLFIHLNWLIIDQ
>Mature_505_residues
SVEKNGTFCYLKNNKKHQNLTGISLEELRGKTPYQLFEKEQADYIVSKFLTCCQLKDTINFQESLEFPTGKGTFQTILSP
ILKDGEVVRIVGIGRDITNQRQSQEGLWSSEKKLSTYLDKAPIGVFIINSLGNFIEINQKICTMTGYSKKDLLELSLIDI
TTSDNYNFNTKVFNNLINDGQVDEFFEINHKNGNKLWLHFQASKIDNDQYICFVGDITKLKESEKSLKKTRKIFNHFLDA
IEDGFWYWDIQTGEFFLSDNFYSMLGYEPNELKLNYNDWHKLIHPDDLESVKKEISQKLLREKEGANIEFRAKTKSGSYK
WINGKGNVVEFDNNRVPIKAAGIQIDINARKEYEELYKSIVNAAKTVSLIVTDLNGIIREFSPGAEAIFGYTRDEMIGKH
VRKIIVSSDLKKIPDFLNKLKREREGFTFETERIRKSGERFPVRLTLQPLFDNEGNFHGTLAIIVDISDLKETEKRLRKS
EQRFILLFLKLQQLFIHLNWLIIDQ

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=398, Percent_Identity=21.608040201005, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 58736; Mature: 58605

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEKNGTFCYLKNNKKHQNLTGISLEELRGKTPYQLFEKEQADYIVSKFLTCCQLKDTI
CCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NFQESLEFPTGKGTFQTILSPILKDGEVVRIVGIGRDITNQRQSQEGLWSSEKKLSTYLD
CHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHH
KAPIGVFIINSLGNFIEINQKICTMTGYSKKDLLELSLIDITTSDNYNFNTKVFNNLIND
CCCCCEEEECCCCCCEEECCCEEEECCCCCHHEEEEEEEEEEECCCCCCCHHHHHHHCCC
GQVDEFFEINHKNGNKLWLHFQASKIDNDQYICFVGDITKLKESEKSLKKTRKIFNHFLD
CCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
AIEDGFWYWDIQTGEFFLSDNFYSMLGYEPNELKLNYNDWHKLIHPDDLESVKKEISQKL
HHHCCEEEEEEECCEEEECCCHHHHHCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHH
LREKEGANIEFRAKTKSGSYKWINGKGNVVEFDNNRVPIKAAGIQIDINARKEYEELYKS
HHHCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEECEEEEECCHHHHHHHHHH
IVNAAKTVSLIVTDLNGIIREFSPGAEAIFGYTRDEMIGKHVRKIIVSSDLKKIPDFLNK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKREREGFTFETERIRKSGERFPVRLTLQPLFDNEGNFHGTLAIIVDISDLKETEKRLRK
HHHHHCCCCEEHHHHHCCCCCCEEEEEEEEEECCCCCCEEEEEEEEEHHHHHHHHHHHHH
SEQRFILLFLKLQQLFIHLNWLIIDQ
HHHHHHHHHHHHHHHHHEEEEEEEEC
>Mature Secondary Structure 
SVEKNGTFCYLKNNKKHQNLTGISLEELRGKTPYQLFEKEQADYIVSKFLTCCQLKDTI
CCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NFQESLEFPTGKGTFQTILSPILKDGEVVRIVGIGRDITNQRQSQEGLWSSEKKLSTYLD
CHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHH
KAPIGVFIINSLGNFIEINQKICTMTGYSKKDLLELSLIDITTSDNYNFNTKVFNNLIND
CCCCCEEEECCCCCCEEECCCEEEECCCCCHHEEEEEEEEEEECCCCCCCHHHHHHHCCC
GQVDEFFEINHKNGNKLWLHFQASKIDNDQYICFVGDITKLKESEKSLKKTRKIFNHFLD
CCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
AIEDGFWYWDIQTGEFFLSDNFYSMLGYEPNELKLNYNDWHKLIHPDDLESVKKEISQKL
HHHCCEEEEEEECCEEEECCCHHHHHCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHH
LREKEGANIEFRAKTKSGSYKWINGKGNVVEFDNNRVPIKAAGIQIDINARKEYEELYKS
HHHCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEECEEEEECCHHHHHHHHHH
IVNAAKTVSLIVTDLNGIIREFSPGAEAIFGYTRDEMIGKHVRKIIVSSDLKKIPDFLNK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKREREGFTFETERIRKSGERFPVRLTLQPLFDNEGNFHGTLAIIVDISDLKETEKRLRK
HHHHHCCCCEEHHHHHCCCCCCEEEEEEEEEECCCCCCEEEEEEEEEHHHHHHHHHHHHH
SEQRFILLFLKLQQLFIHLNWLIIDQ
HHHHHHHHHHHHHHHHHEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]