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The map label for this gene is ykfC [H]

Identifier: 188586435

GI number: 188586435

Start: 1893693

End: 1895120

Strand: Reverse

Name: ykfC [H]

Synonym: Nther_1820

Alternate gene names: 188586435

Gene position: 1895120-1893693 (Counterclockwise)

Preceding gene: 188586436

Following gene: 188586434

Centisome position: 59.87

GC content: 39.5

Gene sequence:

>1428_bases
ATGACTGTTACCAATAAAGGAATGAAGTGCCGCCAACTTCTGACAGGCGAAAGCTGCAAAGAAGGCTCACCGCAGAAGAA
TAGTGCGGAACACGAAGGATATGCGGGAGTGCACAGTTCTTTAAGGATAACTGAAAACAACATCTCCAATGCAAACTTGT
CGAAGGGGAATTTGCTAGAGGAAATTTTGGATAGAGACAACATGAATAAAGCATTCAAGAAAATAAAATCCAACAAAGGC
TCTCACGGGATTGATGGGATGGGAGTAGATGAACTTCTACAATATCTCAAAGAAAACGGGGACCACCTCAGGCAAAGAGT
CCTGGACGGTAAATACCGCCCTAATCCCGTCAGAAGGGTAGAGATACCTAAAGAAGATGGGAAGAAAAGAAAATTAGGCA
TACCTACAGTGGTAGACAGGGTAATCCAACAAGCAATAGCCCAAGTACTATCTCCAATATATGAGGAGCAATTCTCAGAT
AACAGCTATGGTTTTCGCCCTGGACGCAGTACTCATGATGCAATTAAGAAAAGTCAACAAAACATAAATGAAGGATACAA
ATATGTAGTAGATATGGACTTGGAGAAATACTTTGACACAGTAAACCAGAGCAAATTGATAGAAGTGCTATCTAAGACAA
TAAAAGACGGTCGAGTAATATCTCTTATCAACAAATATCTAAGAGCAGGAGTAATGATCAAACACACCTATAAGGATACA
GAAGTTGGCGTGCCCCAGGGCGGGCCTCTTAGCCCTATCCTCAGTAACATAATGCTCCACGAATTGGATAAAGAACTTGA
GAAAAGGGGGCACGAATTCGTCCGCTATGCGGACGACCTGCTAATCTTTTGTAAAAGCAGAAGAAGTGCCGGACGCACCT
TGAAGAACATACTACCCTTCATCGAAAATAAACTATTTCTCAAAGTAAATAAAGATAAAACTGTAGTTGCCTATGTAGGA
AAGGTAAGATTTCTTGGGTTTGGCTTTTACAGACATAAAGGAAAAGCCAGATTAAGAGTTCATCTTAAATCAGTTACAAA
GATGAGAACGAGAATAAAAGAACTCACATCTAGAAGTTATGGAATAAGCAACGAAGCCAGAGCAAAGAAACTTAGCCGAT
ACATTATGGGTTGGGTTAACTACTTTAAACCAGCTGATATGAAGAATCTGTTAATAAATACTGACAGTTGGATGAGAAGG
CGTATTCGCATGATTTACTGGAAACAATGGAAGAAAGTGAGAACAAAATTTAAAATGCTCAAGTTCTTTGGAGCCAATAA
ATACAAAGCATGGGAATATGCAAACACAAGAAAGGGCTACTGGAGAATTTCCAATAGCCCCGTCTTATCCAAATCCCTTG
GAAATGATGTAATCAAAGGATTTGGTTTCCTATTCTTTTCGGAATATTATCGACAAGTTAAAGCGTAA

Upstream 100 bases:

>100_bases
CGGTTGAAATAAGATTTGTCATGAGAAGTCAGCAGATTCCATAGTACTTGATGAGGTCGACATCATTAAGGAAGGGATGA
ACCTAGGAGGAGATCAGTAA

Downstream 100 bases:

>100_bases
ACTAGGAACCGCCGTGTACCGAACGGTTTGCTCGGTGGTGTGAGAGGTCGGTAGATAAAATAATTATCTACCTCCTACTC
GATTAATTAGAAGATTGTAA

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MTVTNKGMKCRQLLTGESCKEGSPQKNSAEHEGYAGVHSSLRITENNISNANLSKGNLLEEILDRDNMNKAFKKIKSNKG
SHGIDGMGVDELLQYLKENGDHLRQRVLDGKYRPNPVRRVEIPKEDGKKRKLGIPTVVDRVIQQAIAQVLSPIYEEQFSD
NSYGFRPGRSTHDAIKKSQQNINEGYKYVVDMDLEKYFDTVNQSKLIEVLSKTIKDGRVISLINKYLRAGVMIKHTYKDT
EVGVPQGGPLSPILSNIMLHELDKELEKRGHEFVRYADDLLIFCKSRRSAGRTLKNILPFIENKLFLKVNKDKTVVAYVG
KVRFLGFGFYRHKGKARLRVHLKSVTKMRTRIKELTSRSYGISNEARAKKLSRYIMGWVNYFKPADMKNLLINTDSWMRR
RIRMIYWKQWKKVRTKFKMLKFFGANKYKAWEYANTRKGYWRISNSPVLSKSLGNDVIKGFGFLFFSEYYRQVKA

Sequences:

>Translated_475_residues
MTVTNKGMKCRQLLTGESCKEGSPQKNSAEHEGYAGVHSSLRITENNISNANLSKGNLLEEILDRDNMNKAFKKIKSNKG
SHGIDGMGVDELLQYLKENGDHLRQRVLDGKYRPNPVRRVEIPKEDGKKRKLGIPTVVDRVIQQAIAQVLSPIYEEQFSD
NSYGFRPGRSTHDAIKKSQQNINEGYKYVVDMDLEKYFDTVNQSKLIEVLSKTIKDGRVISLINKYLRAGVMIKHTYKDT
EVGVPQGGPLSPILSNIMLHELDKELEKRGHEFVRYADDLLIFCKSRRSAGRTLKNILPFIENKLFLKVNKDKTVVAYVG
KVRFLGFGFYRHKGKARLRVHLKSVTKMRTRIKELTSRSYGISNEARAKKLSRYIMGWVNYFKPADMKNLLINTDSWMRR
RIRMIYWKQWKKVRTKFKMLKFFGANKYKAWEYANTRKGYWRISNSPVLSKSLGNDVIKGFGFLFFSEYYRQVKA
>Mature_474_residues
TVTNKGMKCRQLLTGESCKEGSPQKNSAEHEGYAGVHSSLRITENNISNANLSKGNLLEEILDRDNMNKAFKKIKSNKGS
HGIDGMGVDELLQYLKENGDHLRQRVLDGKYRPNPVRRVEIPKEDGKKRKLGIPTVVDRVIQQAIAQVLSPIYEEQFSDN
SYGFRPGRSTHDAIKKSQQNINEGYKYVVDMDLEKYFDTVNQSKLIEVLSKTIKDGRVISLINKYLRAGVMIKHTYKDTE
VGVPQGGPLSPILSNIMLHELDKELEKRGHEFVRYADDLLIFCKSRRSAGRTLKNILPFIENKLFLKVNKDKTVVAYVGK
VRFLGFGFYRHKGKARLRVHLKSVTKMRTRIKELTSRSYGISNEARAKKLSRYIMGWVNYFKPADMKNLLINTDSWMRRR
IRMIYWKQWKKVRTKFKMLKFFGANKYKAWEYANTRKGYWRISNSPVLSKSLGNDVIKGFGFLFFSEYYRQVKA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=232, Percent_Identity=35.7758620689655, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6226520, Length=325, Percent_Identity=28.3076923076923, Blast_Score=115, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 55025; Mature: 54893

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTNKGMKCRQLLTGESCKEGSPQKNSAEHEGYAGVHSSLRITENNISNANLSKGNLLE
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHH
EILDRDNMNKAFKKIKSNKGSHGIDGMGVDELLQYLKENGDHLRQRVLDGKYRPNPVRRV
HHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEE
EIPKEDGKKRKLGIPTVVDRVIQQAIAQVLSPIYEEQFSDNSYGFRPGRSTHDAIKKSQQ
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
NINEGYKYVVDMDLEKYFDTVNQSKLIEVLSKTIKDGRVISLINKYLRAGVMIKHTYKDT
HHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEECCCC
EVGVPQGGPLSPILSNIMLHELDKELEKRGHEFVRYADDLLIFCKSRRSAGRTLKNILPF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IENKLFLKVNKDKTVVAYVGKVRFLGFGFYRHKGKARLRVHLKSVTKMRTRIKELTSRSY
HCCCEEEEECCCCEEEEEHHHHHHHEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GISNEARAKKLSRYIMGWVNYFKPADMKNLLINTDSWMRRRIRMIYWKQWKKVRTKFKML
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
KFFGANKYKAWEYANTRKGYWRISNSPVLSKSLGNDVIKGFGFLFFSEYYRQVKA
HHHCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVTNKGMKCRQLLTGESCKEGSPQKNSAEHEGYAGVHSSLRITENNISNANLSKGNLLE
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHH
EILDRDNMNKAFKKIKSNKGSHGIDGMGVDELLQYLKENGDHLRQRVLDGKYRPNPVRRV
HHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEE
EIPKEDGKKRKLGIPTVVDRVIQQAIAQVLSPIYEEQFSDNSYGFRPGRSTHDAIKKSQQ
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
NINEGYKYVVDMDLEKYFDTVNQSKLIEVLSKTIKDGRVISLINKYLRAGVMIKHTYKDT
HHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEECCCC
EVGVPQGGPLSPILSNIMLHELDKELEKRGHEFVRYADDLLIFCKSRRSAGRTLKNILPF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IENKLFLKVNKDKTVVAYVGKVRFLGFGFYRHKGKARLRVHLKSVTKMRTRIKELTSRSY
HCCCEEEEECCCCEEEEEHHHHHHHEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GISNEARAKKLSRYIMGWVNYFKPADMKNLLINTDSWMRRRIRMIYWKQWKKVRTKFKML
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
KFFGANKYKAWEYANTRKGYWRISNSPVLSKSLGNDVIKGFGFLFFSEYYRQVKA
HHHCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]