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The map label for this gene is ysgA [H]

Identifier: 188586434

GI number: 188586434

Start: 1892737

End: 1893546

Strand: Reverse

Name: ysgA [H]

Synonym: Nther_1819

Alternate gene names: 188586434

Gene position: 1893546-1892737 (Counterclockwise)

Preceding gene: 188586435

Following gene: 188586433

Centisome position: 59.82

GC content: 35.56

Gene sequence:

>810_bases
ATGATTACCGGTGAAAACAATTCTTTAATTAAAAAATACCGTAAGCTCAAGTCTAAAAAATGGAGGCAAGAATATCAACT
AGTACCTTTAGAAGGTTCTTTGCTTATAAAAGAAGCCTTGCATAGCGGAGTCAAATTTGATTTTGTATTATATTCTGCTG
ATCAAGAAGTCATAAATGCTAATGAAGACCTGCTCTTAGAAATACATAATCAGCAAATACCTGCTTATTCTGTGGACCCT
TCTCTGTTTCAAAAAACTGCCTTTACAGAAACGCCTCAGGGTATACTAGCAGTTTGTACTTTCAATGAAGGTGATCTTGA
AAGCCTGACCAGTGAGAAAAAAGATATTTTAATTTTATATCAAGTACAAGATCCGGGGAATATGGGTACTTTGATCAGAA
GTGCTGATGCCTTTGGATTTCAGGGTGTAGTATGTTCAAAGGGTTGTGTTGATCCAACAAATGACAAAGTCGTTCGAAGT
AGTATGGGATCTTTATTTCACATACCTGTTGTGATGAATTCAGAAATTGACCAACTATTTCAAGTTTTGCAAAGAGAACA
GTACTTTATCCTTTTTGGAGACAAATCAGGTAGTAAGCCAATTATGACAATTGACTTGTCCAACACTGCAGTAGCCTTAT
TTGTCGGCAATGAGTCCCGGGGTTTACAGGATTTAAATTTTGATCAAAAGTTCAATCAGGTTAGACATCAAAAAGTGGAA
ATTCCCATGTTTGGGAAAGCTGAATCTTTAAATGCTGGAATTGCTGGTTCTATTATGATGTACGAACTGTCTAAAAAACG
ATTTTATTAG

Upstream 100 bases:

>100_bases
GTCGGTAGATAAAATAATTATCTACCTCCTACTCGATTAATTAGAAGATTGTAAAATATAAAATTTCGCTTAAATGCTTT
GGAAGGCGGTGCCATTCGAC

Downstream 100 bases:

>100_bases
GTGCTTTACTTGTTTTGCCGGGGCCTATGTGGTATAATTTACGTAAACCAATTGAAGGGTGGGGTCCCAAAAATGATTGA
TGCAAACTTTTTTTGGCGAA

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MITGENNSLIKKYRKLKSKKWRQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINANEDLLLEIHNQQIPAYSVDP
SLFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDILILYQVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRS
SMGSLFHIPVVMNSEIDQLFQVLQREQYFILFGDKSGSKPIMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQVRHQKVE
IPMFGKAESLNAGIAGSIMMYELSKKRFY

Sequences:

>Translated_269_residues
MITGENNSLIKKYRKLKSKKWRQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINANEDLLLEIHNQQIPAYSVDP
SLFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDILILYQVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRS
SMGSLFHIPVVMNSEIDQLFQVLQREQYFILFGDKSGSKPIMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQVRHQKVE
IPMFGKAESLNAGIAGSIMMYELSKKRFY
>Mature_269_residues
MITGENNSLIKKYRKLKSKKWRQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINANEDLLLEIHNQQIPAYSVDP
SLFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDILILYQVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRS
SMGSLFHIPVVMNSEIDQLFQVLQREQYFILFGDKSGSKPIMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQVRHQKVE
IPMFGKAESLNAGIAGSIMMYELSKKRFY

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=302, Percent_Identity=24.5033112582781, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1790623, Length=181, Percent_Identity=26.5193370165746, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24666840, Length=275, Percent_Identity=24, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30251; Mature: 30251

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITGENNSLIKKYRKLKSKKWRQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINA
CCCCCCHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCEEEEEEEECCHHHHCC
NEDLLLEIHNQQIPAYSVDPSLFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDILILY
CCEEEEEEECCCCCCEECCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCEEEEE
QVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRSSMGSLFHIPVVMNSEIDQLF
EECCCCCCCHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEEEEECCCHHHHH
QVLQREQYFILFGDKSGSKPIMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQVRHQKVE
HHHCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEC
IPMFGKAESLNAGIAGSIMMYELSKKRFY
CCCCCCCCCCCCCCCCEEEEEEEHHHCCC
>Mature Secondary Structure
MITGENNSLIKKYRKLKSKKWRQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINA
CCCCCCHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCEEEEEEEECCHHHHCC
NEDLLLEIHNQQIPAYSVDPSLFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDILILY
CCEEEEEEECCCCCCEECCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCEEEEE
QVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRSSMGSLFHIPVVMNSEIDQLF
EECCCCCCCHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEEEEECCCHHHHH
QVLQREQYFILFGDKSGSKPIMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQVRHQKVE
HHHCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEC
IPMFGKAESLNAGIAGSIMMYELSKKRFY
CCCCCCCCCCCCCCCCEEEEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]