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The map label for this gene is xseB [H]

Identifier: 188586315

GI number: 188586315

Start: 1773671

End: 1773943

Strand: Reverse

Name: xseB [H]

Synonym: Nther_1698

Alternate gene names: 188586315

Gene position: 1773943-1773671 (Counterclockwise)

Preceding gene: 188586316

Following gene: 188586314

Centisome position: 56.04

GC content: 34.8

Gene sequence:

>273_bases
ATGACAGACAATAACAAAGAGGAAATCAATCAAAATAATCAAGAAAATGTAGAGTTCGAACATGCTTTAACTGAGCTAGA
AAAGGTTGTGCAGGCACTAGAACGGGGCGAGCTCACCCTTGAAGAATCTTTGAAAAAATTCCAAAAAGGAATTGAATTGT
CCAGAGTTTGTAATGAGAAATTAAAACAGGCAGAAAAACAAATTGAAAAATTGACAAAGGATGAGGAAACAGGTGAATTA
AAGTTTGAGCCAGTTGATTTTGAGGAGGAATAA

Upstream 100 bases:

>100_bases
TTTGATGGTTCTGCGAAATGTTTAGTAAAGGAAAAGCAAGAACATCATATAAGTGAAGACCATTCAAATTTGAATTCTTT
GTGTAATGAGGAGGAAGACT

Downstream 100 bases:

>100_bases
TCATGTCTTTAGATGTTTTTATGAAAAATAACAAAAATTTAGTGGATCAAAAGTTACAGGAATACCTTCCCAATAAATCT
GAATATCCTACTGCAATCCA

Product: Exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MTDNNKEEINQNNQENVEFEHALTELEKVVQALERGELTLEESLKKFQKGIELSRVCNEKLKQAEKQIEKLTKDEETGEL
KFEPVDFEEE

Sequences:

>Translated_90_residues
MTDNNKEEINQNNQENVEFEHALTELEKVVQALERGELTLEESLKKFQKGIELSRVCNEKLKQAEKQIEKLTKDEETGEL
KFEPVDFEEE
>Mature_89_residues
TDNNKEEINQNNQENVEFEHALTELEKVVQALERGELTLEESLKKFQKGIELSRVCNEKLKQAEKQIEKLTKDEETGELK
FEPVDFEEE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=73, Percent_Identity=43.8356164383562, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 10582; Mature: 10451

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNNKEEINQNNQENVEFEHALTELEKVVQALERGELTLEESLKKFQKGIELSRVCNEK
CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
LKQAEKQIEKLTKDEETGELKFEPVDFEEE
HHHHHHHHHHHHCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
TDNNKEEINQNNQENVEFEHALTELEKVVQALERGELTLEESLKKFQKGIELSRVCNEK
CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
LKQAEKQIEKLTKDEETGELKFEPVDFEEE
HHHHHHHHHHHHCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA