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The map label for this gene is spmB [H]

Identifier: 188586263

GI number: 188586263

Start: 1725569

End: 1726102

Strand: Reverse

Name: spmB [H]

Synonym: Nther_1646

Alternate gene names: 188586263

Gene position: 1726102-1725569 (Counterclockwise)

Preceding gene: 188586264

Following gene: 188586262

Centisome position: 54.53

GC content: 36.33

Gene sequence:

>534_bases
GTGTTTGAAGTTGTTAACTTTATTTCAAAATGGGCAGTTCCTGCAATGATAACCATCACCCTTCTGTATGGTTATTTTAA
GAAGATAAATGTCTTCGATGTTTTTATAGAAGGTGCTAAAGAAGGTTTTGAGACATCAGTTAAATTAATCCCTTCTTTAG
TGGCTATGTTAAGTGCTCTCGGTATTTTTAGAGCCAGTGGTGGTATGGATTTTATCTTAGAAATCATAGAGCCTGTTATG
GATACATTTAATATTCCTACAGAAGTTGTCCCCTTGGCATTAATGAGACCGATTTCTGGATCTAGTACTTTCGCAATGAC
TACAGAATTAATTCACAGTCATGGACCAGATTCTCTAGTAGGACGAATCGCTTCCACAATGCAAGGAAGTACTGATACAA
CTCTTTTTGTATTAACTGTATATTTCGGAGCCGTTGGAATTAAAAAAACTAGACATGCCATGGGAGTAGGCCTAGTGGGG
GATTTTGTAGGTTTTATAGTTTCAGTGTTTATTTGCCTTGCAGTTTTTACTTAA

Upstream 100 bases:

>100_bases
GATTGTTGGTACTACTGTAATAGCTACTTTTTGTTCATCCTTAGCAGCTATTGTTACGGATAAAATTGCCCAAAAGTTTA
GCTGAATAGGAGGCTAATCC

Downstream 100 bases:

>100_bases
ATATATTTGAGAAAATCCAACCAAATTGATAAAATTAACTATGCAAAAAATAATAAAGGAGGTCTACATATTGAATAAAC
CAAATCCAGAAAAAAAGTTA

Product: nucleoside recognition domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MFEVVNFISKWAVPAMITITLLYGYFKKINVFDVFIEGAKEGFETSVKLIPSLVAMLSALGIFRASGGMDFILEIIEPVM
DTFNIPTEVVPLALMRPISGSSTFAMTTELIHSHGPDSLVGRIASTMQGSTDTTLFVLTVYFGAVGIKKTRHAMGVGLVG
DFVGFIVSVFICLAVFT

Sequences:

>Translated_177_residues
MFEVVNFISKWAVPAMITITLLYGYFKKINVFDVFIEGAKEGFETSVKLIPSLVAMLSALGIFRASGGMDFILEIIEPVM
DTFNIPTEVVPLALMRPISGSSTFAMTTELIHSHGPDSLVGRIASTMQGSTDTTLFVLTVYFGAVGIKKTRHAMGVGLVG
DFVGFIVSVFICLAVFT
>Mature_177_residues
MFEVVNFISKWAVPAMITITLLYGYFKKINVFDVFIEGAKEGFETSVKLIPSLVAMLSALGIFRASGGMDFILEIIEPVM
DTFNIPTEVVPLALMRPISGSSTFAMTTELIHSHGPDSLVGRIASTMQGSTDTTLFVLTVYFGAVGIKKTRHAMGVGLVG
DFVGFIVSVFICLAVFT

Specific function: Involved in spore core dehydration; might be involved in the transport of something into or out of the forespore or could be required for some modification of the cortex peptidoglycan structure [H]

COG id: COG0700

COG function: function code S; Uncharacterized membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the spmB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011642 [H]

Pfam domain/function: PF07670 Gate [H]

EC number: NA

Molecular weight: Translated: 19158; Mature: 19158

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEVVNFISKWAVPAMITITLLYGYFKKINVFDVFIEGAKEGFETSVKLIPSLVAMLSAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFRASGGMDFILEIIEPVMDTFNIPTEVVPLALMRPISGSSTFAMTTELIHSHGPDSLV
HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
GRIASTMQGSTDTTLFVLTVYFGAVGIKKTRHAMGVGLVGDFVGFIVSVFICLAVFT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFEVVNFISKWAVPAMITITLLYGYFKKINVFDVFIEGAKEGFETSVKLIPSLVAMLSAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFRASGGMDFILEIIEPVMDTFNIPTEVVPLALMRPISGSSTFAMTTELIHSHGPDSLV
HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
GRIASTMQGSTDTTLFVLTVYFGAVGIKKTRHAMGVGLVGDFVGFIVSVFICLAVFT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 1548223; 7642500 [H]