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The map label for this gene is crtN [H]

Identifier: 188586223

GI number: 188586223

Start: 1682743

End: 1684278

Strand: Reverse

Name: crtN [H]

Synonym: Nther_1606

Alternate gene names: 188586223

Gene position: 1684278-1682743 (Counterclockwise)

Preceding gene: 188586224

Following gene: 188586222

Centisome position: 53.21

GC content: 32.62

Gene sequence:

>1536_bases
TTGCGTGTTGGTATTGTTGGAGCAGGTCCAAGCGGTTTAGCTGCCGGAATGTTATTAGCTTCAAAAGGTTTTCAAGTATC
TATCTATGAAAAAAATACTCAGATTGGTGGAAAATGTAGTGTTATGAATGACCAAGACGGAAAATTCACCTTTGATTTAG
GCCCAACTTATTTTATAATGCCTTTTGTTCTTGAAGATATTTTTTGGCAGTGCAATAAAAATCTGCATAATTATGTAGAT
TTAAAGTTATTAGAACCTTTTTATCAGATAATATATCAAGATGGTTCCAGGTTATATCCTCGCAGAAACTATAAGCGATT
AAAAGAAAATATTCATCAGTTTAGCAGTGCCGATGTTTCCGGACTGGATAAATTCTTAGATGACAATAGTAAAAAATATG
AAAATCTTTTTTATGCTCTCAGAGCTGGTTACTCTAATTTTAAAAACTTACCAAAATGGAATTTAATTAGTAATTTTGCA
CATCTCAAACCATTCACTAATTTTTGGAAAGATTTAGAACAGTATTTTGAGAATGACAAGGTAAAATTTGGTTTTACATT
TCAGACTAAATATGTTGGTAGATCCTTTCATAAATGCCCTTCATTATATAGCATTCTCTCATATCTTGAATATAGTATGG
GTGTTTTTCATGTGATGGGAGGGCTAAATAAATTATCAAAAGCTATGGGAAAGGTCATTGAAGAGTTGGGAGGGCAAATT
TATTTAAATTGTGAAGTAAAACAAATAAACACAAGTGACAATCAAGCTAAGGAAATTGTTTTAAAAGACGGTTCGTCCAA
AGAGCTCGATGAAGTGATATGTGCTACAAACGATTTGAATCATATAATGAAGTTAGTCAATAAGTCGGAAAGAAAAAAGG
ATCTGAAAGTGTCTAGTGATGTAAACTATTCATACTCAAAAATGGTTATGTACCTGGGATTATCAAAAACTTTCTATAAT
CTCATGCATCACAGCATAATTGTCCCTGAAAATTTCTGGGATACCTTTGAAGAACTTAATAAAGGTGAGATACCAGAAGA
TCCTATTATATCCGTCCAAAACCCTTGTGTAACAGATCCTAGTTTGGCAGAGGGCGATAGGTCTGTAATGCAGTTGTCCG
TCGCTGTACCTAATTTGAACACTAATATTAACTGGAATGAAATATTGATTAAAAAATTACAAACTAAGATAATTAACTGT
GTTGAAAAACATTTAGAAATCAAAGACATTGAAAAGTATATTGAGTTTCAAGATATTAAGTCTCCCCAAGATTGGTACGA
AAACTTTAATAGCCCCTATGGGGCATGTTTCGGTAAAATTTCAAATTTAAAAGAAATACTTGGTATAAATGTGAATAATA
ACCTCACGTTTTGGAACAATTTATGGATAACAGGCTCTTTAGCTATATCTGGAAATAACCTGGCTTTAACTTACGAAGCT
GGTCGAAGTGTAGCGCACGAAATAATAAAAAAATATGGGATTGAACCACCTGAACTAGTAAATCCACCGGTTTCACATTT
CCAAGAAGAAGATTAA

Upstream 100 bases:

>100_bases
AAAAATTACTAGCATAAGTGGTATAATTTAACTTGAGATGTCATTGACATTTTTAATGATTATTGTATCAAGTGTTAAAA
ATTATGGAGGAGAGATTTCT

Downstream 100 bases:

>100_bases
AAAAGACAATGGTGATTAAGAATATTTGCAGGTACATAAAAAATGAGTTACAATTTAATGAAACACTATTGGTTATAATT
ATTAAAAAGACAGCGAGACA

Product: phytoene desaturase

Products: NA

Alternate protein names: 4,4'-diapophytoene desaturase; Diapophytoene desaturase [H]

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MRVGIVGAGPSGLAAGMLLASKGFQVSIYEKNTQIGGKCSVMNDQDGKFTFDLGPTYFIMPFVLEDIFWQCNKNLHNYVD
LKLLEPFYQIIYQDGSRLYPRRNYKRLKENIHQFSSADVSGLDKFLDDNSKKYENLFYALRAGYSNFKNLPKWNLISNFA
HLKPFTNFWKDLEQYFENDKVKFGFTFQTKYVGRSFHKCPSLYSILSYLEYSMGVFHVMGGLNKLSKAMGKVIEELGGQI
YLNCEVKQINTSDNQAKEIVLKDGSSKELDEVICATNDLNHIMKLVNKSERKKDLKVSSDVNYSYSKMVMYLGLSKTFYN
LMHHSIIVPENFWDTFEELNKGEIPEDPIISVQNPCVTDPSLAEGDRSVMQLSVAVPNLNTNINWNEILIKKLQTKIINC
VEKHLEIKDIEKYIEFQDIKSPQDWYENFNSPYGACFGKISNLKEILGINVNNNLTFWNNLWITGSLAISGNNLALTYEA
GRSVAHEIIKKYGIEPPELVNPPVSHFQEED

Sequences:

>Translated_511_residues
MRVGIVGAGPSGLAAGMLLASKGFQVSIYEKNTQIGGKCSVMNDQDGKFTFDLGPTYFIMPFVLEDIFWQCNKNLHNYVD
LKLLEPFYQIIYQDGSRLYPRRNYKRLKENIHQFSSADVSGLDKFLDDNSKKYENLFYALRAGYSNFKNLPKWNLISNFA
HLKPFTNFWKDLEQYFENDKVKFGFTFQTKYVGRSFHKCPSLYSILSYLEYSMGVFHVMGGLNKLSKAMGKVIEELGGQI
YLNCEVKQINTSDNQAKEIVLKDGSSKELDEVICATNDLNHIMKLVNKSERKKDLKVSSDVNYSYSKMVMYLGLSKTFYN
LMHHSIIVPENFWDTFEELNKGEIPEDPIISVQNPCVTDPSLAEGDRSVMQLSVAVPNLNTNINWNEILIKKLQTKIINC
VEKHLEIKDIEKYIEFQDIKSPQDWYENFNSPYGACFGKISNLKEILGINVNNNLTFWNNLWITGSLAISGNNLALTYEA
GRSVAHEIIKKYGIEPPELVNPPVSHFQEED
>Mature_511_residues
MRVGIVGAGPSGLAAGMLLASKGFQVSIYEKNTQIGGKCSVMNDQDGKFTFDLGPTYFIMPFVLEDIFWQCNKNLHNYVD
LKLLEPFYQIIYQDGSRLYPRRNYKRLKENIHQFSSADVSGLDKFLDDNSKKYENLFYALRAGYSNFKNLPKWNLISNFA
HLKPFTNFWKDLEQYFENDKVKFGFTFQTKYVGRSFHKCPSLYSILSYLEYSMGVFHVMGGLNKLSKAMGKVIEELGGQI
YLNCEVKQINTSDNQAKEIVLKDGSSKELDEVICATNDLNHIMKLVNKSERKKDLKVSSDVNYSYSKMVMYLGLSKTFYN
LMHHSIIVPENFWDTFEELNKGEIPEDPIISVQNPCVTDPSLAEGDRSVMQLSVAVPNLNTNINWNEILIKKLQTKIINC
VEKHLEIKDIEKYIEFQDIKSPQDWYENFNSPYGACFGKISNLKEILGINVNNNLTFWNNLWITGSLAISGNNLALTYEA
GRSVAHEIIKKYGIEPPELVNPPVSHFQEED

Specific function: Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'- diaponeurosporene (the

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family. CrtN subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 58563; Mature: 58563

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVGIVGAGPSGLAAGMLLASKGFQVSIYEKNTQIGGKCSVMNDQDGKFTFDLGPTYFIM
CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCCEEEECCCHHHHH
PFVLEDIFWQCNKNLHNYVDLKLLEPFYQIIYQDGSRLYPRRNYKRLKENIHQFSSADVS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHH
GLDKFLDDNSKKYENLFYALRAGYSNFKNLPKWNLISNFAHLKPFTNFWKDLEQYFENDK
HHHHHHCCCCHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCC
VKFGFTFQTKYVGRSFHKCPSLYSILSYLEYSMGVFHVMGGLNKLSKAMGKVIEELGGQI
EEEEEEEEHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YLNCEVKQINTSDNQAKEIVLKDGSSKELDEVICATNDLNHIMKLVNKSERKKDLKVSSD
EEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
VNYSYSKMVMYLGLSKTFYNLMHHSIIVPENFWDTFEELNKGEIPEDPIISVQNPCVTDP
CCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCC
SLAEGDRSVMQLSVAVPNLNTNINWNEILIKKLQTKIINCVEKHLEIKDIEKYIEFQDIK
CCCCCCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
SPQDWYENFNSPYGACFGKISNLKEILGINVNNNLTFWNNLWITGSLAISGNNLALTYEA
CHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEEEEEEEECCCEEEEEHH
GRSVAHEIIKKYGIEPPELVNPPVSHFQEED
HHHHHHHHHHHHCCCCCHHCCCCHHHCCCCC
>Mature Secondary Structure
MRVGIVGAGPSGLAAGMLLASKGFQVSIYEKNTQIGGKCSVMNDQDGKFTFDLGPTYFIM
CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCCEEEECCCHHHHH
PFVLEDIFWQCNKNLHNYVDLKLLEPFYQIIYQDGSRLYPRRNYKRLKENIHQFSSADVS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHH
GLDKFLDDNSKKYENLFYALRAGYSNFKNLPKWNLISNFAHLKPFTNFWKDLEQYFENDK
HHHHHHCCCCHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCC
VKFGFTFQTKYVGRSFHKCPSLYSILSYLEYSMGVFHVMGGLNKLSKAMGKVIEELGGQI
EEEEEEEEHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YLNCEVKQINTSDNQAKEIVLKDGSSKELDEVICATNDLNHIMKLVNKSERKKDLKVSSD
EEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
VNYSYSKMVMYLGLSKTFYNLMHHSIIVPENFWDTFEELNKGEIPEDPIISVQNPCVTDP
CCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCC
SLAEGDRSVMQLSVAVPNLNTNINWNEILIKKLQTKIINCVEKHLEIKDIEKYIEFQDIK
CCCCCCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
SPQDWYENFNSPYGACFGKISNLKEILGINVNNNLTFWNNLWITGSLAISGNNLALTYEA
CHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEEEEEEEECCCEEEEEHH
GRSVAHEIIKKYGIEPPELVNPPVSHFQEED
HHHHHHHHHHHHCCCCCHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA