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The map label for this gene is yagI [H]

Identifier: 188585787

GI number: 188585787

Start: 1229355

End: 1230158

Strand: Direct

Name: yagI [H]

Synonym: Nther_1161

Alternate gene names: 188585787

Gene position: 1229355-1230158 (Clockwise)

Preceding gene: 188585786

Following gene: 188585788

Centisome position: 38.84

GC content: 35.32

Gene sequence:

>804_bases
TTGAATCAATTAATTACACCTATGTATAAACCTAAATATCCTGTTCAAACGCTAGAAAAAGCTTTTGAAATTGTAGAAAT
ATTATCATTACAAGAATCCGATGATGGTCTAGGAGTCAGCGAATTGAGTAGTAGATTAAACATTGGTAAGAGCACTATTC
ATAGATTGTTAGATACTCTAGTTGCCTATCAGTACGTTGAAAAACTACCTGACAACAAATATAGACTGAGCTGGAAAATT
TTTCAGTTAGGAAGTGCCGTACCCAGGCAGAGATCTGTAGGTAATCTAGATCCTAAATACCTAAAAGAACTATGTGAAAA
GTTTCAAGAAACTGTCAACTTAGGGGTTAAAGAAGGAAGAGACGTAGTAGTTGTTTCTAAGGTGGAGCCAGAAACCAGCT
ATAGATTAAAGGCTAATTTCCATGTAGGTGAAAAAGAACCCTTTTATGCAACTGCTATGGGAAAAGTGCTGTTTTCTGAA
TTGAGAGAAGAAAATCTCAGACAACTACTAGAAGACTTTCAGTTAGAAAAATTGACAGAAAAAACCATTACATCAGTGGA
CGAGCTTTTGAATGAGTTAAGAAATGTAAAGAAACAAGGTTATGCTATTGACGATGAAGAGTATTGTAAAGGACTATGTT
GTATAGCCATGCCTGTTAAGGATTTTTCCGGAAAGACAGTTGCGGCCATTAGTGTGAGTGGTCCTTCTTTTAGATTAGAT
TTTAAGAAAATGATGACAATTAAAGAAGAACTAGAGAGAGTTACTACAGAGGTCAGTCGCCATTTCGGTTATGGTGTTAA
ATAA

Upstream 100 bases:

>100_bases
TATATATCTATAGGCTTTATTAACATAAAAAAAACTGATAAACTGTTATTAGATCTTATTATACTTACGTCCATGTAAGT
AGAACTGTGAGGTGACTAAA

Downstream 100 bases:

>100_bases
AATAGACTTGTTAATTTCAGTGTATTAAAACTTAATTATAATTCAATTAATAAAATTTAGATAAAAATATTGAATACTCA
TTGAAAATATGTGGATTATT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MNQLITPMYKPKYPVQTLEKAFEIVEILSLQESDDGLGVSELSSRLNIGKSTIHRLLDTLVAYQYVEKLPDNKYRLSWKI
FQLGSAVPRQRSVGNLDPKYLKELCEKFQETVNLGVKEGRDVVVVSKVEPETSYRLKANFHVGEKEPFYATAMGKVLFSE
LREENLRQLLEDFQLEKLTEKTITSVDELLNELRNVKKQGYAIDDEEYCKGLCCIAMPVKDFSGKTVAAISVSGPSFRLD
FKKMMTIKEELERVTTEVSRHFGYGVK

Sequences:

>Translated_267_residues
MNQLITPMYKPKYPVQTLEKAFEIVEILSLQESDDGLGVSELSSRLNIGKSTIHRLLDTLVAYQYVEKLPDNKYRLSWKI
FQLGSAVPRQRSVGNLDPKYLKELCEKFQETVNLGVKEGRDVVVVSKVEPETSYRLKANFHVGEKEPFYATAMGKVLFSE
LREENLRQLLEDFQLEKLTEKTITSVDELLNELRNVKKQGYAIDDEEYCKGLCCIAMPVKDFSGKTVAAISVSGPSFRLD
FKKMMTIKEELERVTTEVSRHFGYGVK
>Mature_267_residues
MNQLITPMYKPKYPVQTLEKAFEIVEILSLQESDDGLGVSELSSRLNIGKSTIHRLLDTLVAYQYVEKLPDNKYRLSWKI
FQLGSAVPRQRSVGNLDPKYLKELCEKFQETVNLGVKEGRDVVVVSKVEPETSYRLKANFHVGEKEPFYATAMGKVLFSE
LREENLRQLLEDFQLEKLTEKTITSVDELLNELRNVKKQGYAIDDEEYCKGLCCIAMPVKDFSGKTVAAISVSGPSFRLD
FKKMMTIKEELERVTTEVSRHFGYGVK

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=256, Percent_Identity=33.59375, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788131, Length=256, Percent_Identity=32.8125, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1786715, Length=252, Percent_Identity=30.1587301587302, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789999, Length=255, Percent_Identity=29.0196078431373, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI87082359, Length=252, Percent_Identity=28.5714285714286, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790752, Length=224, Percent_Identity=27.6785714285714, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788581, Length=240, Percent_Identity=22.0833333333333, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 30550; Mature: 30550

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLITPMYKPKYPVQTLEKAFEIVEILSLQESDDGLGVSELSSRLNIGKSTIHRLLDTL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
VAYQYVEKLPDNKYRLSWKIFQLGSAVPRQRSVGNLDPKYLKELCEKFQETVNLGVKEGR
HHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
DVVVVSKVEPETSYRLKANFHVGEKEPFYATAMGKVLFSELREENLRQLLEDFQLEKLTE
CEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTITSVDELLNELRNVKKQGYAIDDEEYCKGLCCIAMPVKDFSGKTVAAISVSGPSFRLD
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEEECCCCCCCEEEEEEECCCCEEHH
FKKMMTIKEELERVTTEVSRHFGYGVK
HHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNQLITPMYKPKYPVQTLEKAFEIVEILSLQESDDGLGVSELSSRLNIGKSTIHRLLDTL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
VAYQYVEKLPDNKYRLSWKIFQLGSAVPRQRSVGNLDPKYLKELCEKFQETVNLGVKEGR
HHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
DVVVVSKVEPETSYRLKANFHVGEKEPFYATAMGKVLFSELREENLRQLLEDFQLEKLTE
CEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTITSVDELLNELRNVKKQGYAIDDEEYCKGLCCIAMPVKDFSGKTVAAISVSGPSFRLD
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEEECCCCCCCEEEEEEECCCCEEHH
FKKMMTIKEELERVTTEVSRHFGYGVK
HHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]