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The map label for this gene is ccsA [H]

Identifier: 188585748

GI number: 188585748

Start: 1189730

End: 1190563

Strand: Direct

Name: ccsA [H]

Synonym: Nther_1122

Alternate gene names: 188585748

Gene position: 1189730-1190563 (Clockwise)

Preceding gene: 188585747

Following gene: 188585749

Centisome position: 37.58

GC content: 32.37

Gene sequence:

>834_bases
ATGAATCCGATTTCCATAATTAATCTTATAATAGCTATCAGTTTGCTTGCATCGACAGCCTTATTTATTCTTTCAGTAAA
ATATTTAGATCAGCCTGGAAATAACTATCAAAAAGCTATTTCTCAATTTCTGGGTGATTTTGGCTATCTATTGCTGTTGT
CTAAATTTATAGGTAGGAGCTATGCTTTAGGGTATTTGTCATTATTTTCATTTTATGAGACGCTGATTTTAGCTGCAATT
GTCTTGGTAACCGTGGCCAAAGCTGCAGAAAAAATATATGATGTTGAGCTATTAAAATTTTTCAGTTATCCTTTGTCAGC
TTTATTTATGATAGTCTCTTTATTTGCTCCCCAAAATCCTCCGCAACTTACTTCCGAAATGATGGGAGGATGGCTTGGCT
ATCATATAGCCTTTGTGATTATTGCATATGGTTGTTTTAGTGCGTCTTTTTTAACTGAAGGAATGTATTTGTTTCTGGAT
CGTTGTATAAAAAACAAACAAATTACTATTATTGTCAAATTGATTCCTTCTCTAGATCAGCTGAACAAGTTAAATTATCG
GATAATATTTACCGGGTTCATATTTTTAACAGTAGGTATTGGATTTGGCGGTATATGGAGTGATGAAATTTGGGGTGCTT
ACTGGTTTTGGGAGCCCAAATTTATAGTTACCCTTTTCATTTGGTTGGTGTATGGAATATATCTGTATAATAAATTAATA
TGGGGATTTCAAGGTAAGGTGATTTCTTATTTGAATTTAATTGGTTTTATTGCAATTATGATAAATTATTTTGTGGTAAG
ATTGCTGGATGGTGGACTACATCACTTTTATTAA

Upstream 100 bases:

>100_bases
TTTGATTTAGAAGATGAAGTTATCCCCAAGGATGGAGAAGAGCATTCATCTTCAAAGGAAGTTGAGTCCGTTACTCAATC
TTCTACAGAGAGGGGTCACC

Downstream 100 bases:

>100_bases
TTATTCTTTTGGGAGGCTGCAAAAGTGATCAGCTACGAAAGTTACCCTATAATGTTGAACCTATCGGAAATTGAAGCAAA
TTGTGTTGTTGTTGGTGGAG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNPISIINLIIAISLLASTALFILSVKYLDQPGNNYQKAISQFLGDFGYLLLLSKFIGRSYALGYLSLFSFYETLILAAI
VLVTVAKAAEKIYDVELLKFFSYPLSALFMIVSLFAPQNPPQLTSEMMGGWLGYHIAFVIIAYGCFSASFLTEGMYLFLD
RCIKNKQITIIVKLIPSLDQLNKLNYRIIFTGFIFLTVGIGFGGIWSDEIWGAYWFWEPKFIVTLFIWLVYGIYLYNKLI
WGFQGKVISYLNLIGFIAIMINYFVVRLLDGGLHHFY

Sequences:

>Translated_277_residues
MNPISIINLIIAISLLASTALFILSVKYLDQPGNNYQKAISQFLGDFGYLLLLSKFIGRSYALGYLSLFSFYETLILAAI
VLVTVAKAAEKIYDVELLKFFSYPLSALFMIVSLFAPQNPPQLTSEMMGGWLGYHIAFVIIAYGCFSASFLTEGMYLFLD
RCIKNKQITIIVKLIPSLDQLNKLNYRIIFTGFIFLTVGIGFGGIWSDEIWGAYWFWEPKFIVTLFIWLVYGIYLYNKLI
WGFQGKVISYLNLIGFIAIMINYFVVRLLDGGLHHFY
>Mature_277_residues
MNPISIINLIIAISLLASTALFILSVKYLDQPGNNYQKAISQFLGDFGYLLLLSKFIGRSYALGYLSLFSFYETLILAAI
VLVTVAKAAEKIYDVELLKFFSYPLSALFMIVSLFAPQNPPQLTSEMMGGWLGYHIAFVIIAYGCFSASFLTEGMYLFLD
RCIKNKQITIIVKLIPSLDQLNKLNYRIIFTGFIFLTVGIGFGGIWSDEIWGAYWFWEPKFIVTLFIWLVYGIYLYNKLI
WGFQGKVISYLNLIGFIAIMINYFVVRLLDGGLHHFY

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31606; Mature: 31606

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC
>Mature Secondary Structure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HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA