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The map label for this gene is sodF [H]

Identifier: 188585702

GI number: 188585702

Start: 1131731

End: 1132318

Strand: Direct

Name: sodF [H]

Synonym: Nther_1075

Alternate gene names: 188585702

Gene position: 1131731-1132318 (Clockwise)

Preceding gene: 188585701

Following gene: 188585704

Centisome position: 35.75

GC content: 35.71

Gene sequence:

>588_bases
ATGAATTTTAAATTACCGGATCTGCCTTATAGTTATAATTCACTGGAACCTCATTATGATCAACAGACCTTGAAACTTCA
TCATAGTAAACACCATCAATCCTATGTTAATGGTTTAAATAATGCTCTAGAAAAATTAAAAGTTGCTAGAGAAAACAATG
ATTATAACGGTATAAAGCACTGGCAAAGAGAACTAGCCTTTCATGGATCTGGCCATATTTTACACACTTTATTCTTTAAT
AATTTGGGTCCGGAACAAGGAAATCTATCAAAGAGTCTGCGGGATCAGATTAACAAAGATTTTGGCAGTTTTGAAATGTT
TGCAGCTCAATTTACCAATGCTGCTAAAACCGTTGAAGCTTCGGGTTGGGCTGTCTTAGCATGGAACGATGTTTTAGAGC
AATTGCTGGTACTGACATTAGAAAAACATCAAAATCTAACTGTGATTGGTGCTAAACCTCTATTGGTGATTGACATGTGG
GAACACGCTTATTATCTTCAGTATCAGAATGATCGAGCTGCTTATATTAATGCTTGGTGGGAGATTGTCAATTGGAATGA
GGTTTCTAGACGATTTGAAAATCCTTAA

Upstream 100 bases:

>100_bases
AATCAAGGGCTTTATTAAATGAGATTAATATTTTATAAATCACACAATTTGGGAAATAATAAAACCAGCCAAAAACAGTA
CAAAAAGGAGAGCTAATAAA

Downstream 100 bases:

>100_bases
AAATTAATCAAATATTGTTTAAACTTAACCTTACCCTGTAAAAAGCATTTATAAACAAAACAGTACGTGCCTAAGAAAAT
ATCCAAGGCACGTACTTGTT

Product: Superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MNFKLPDLPYSYNSLEPHYDQQTLKLHHSKHHQSYVNGLNNALEKLKVARENNDYNGIKHWQRELAFHGSGHILHTLFFN
NLGPEQGNLSKSLRDQINKDFGSFEMFAAQFTNAAKTVEASGWAVLAWNDVLEQLLVLTLEKHQNLTVIGAKPLLVIDMW
EHAYYLQYQNDRAAYINAWWEIVNWNEVSRRFENP

Sequences:

>Translated_195_residues
MNFKLPDLPYSYNSLEPHYDQQTLKLHHSKHHQSYVNGLNNALEKLKVARENNDYNGIKHWQRELAFHGSGHILHTLFFN
NLGPEQGNLSKSLRDQINKDFGSFEMFAAQFTNAAKTVEASGWAVLAWNDVLEQLLVLTLEKHQNLTVIGAKPLLVIDMW
EHAYYLQYQNDRAAYINAWWEIVNWNEVSRRFENP
>Mature_195_residues
MNFKLPDLPYSYNSLEPHYDQQTLKLHHSKHHQSYVNGLNNALEKLKVARENNDYNGIKHWQRELAFHGSGHILHTLFFN
NLGPEQGNLSKSLRDQINKDFGSFEMFAAQFTNAAKTVEASGWAVLAWNDVLEQLLVLTLEKHQNLTVIGAKPLLVIDMW
EHAYYLQYQNDRAAYINAWWEIVNWNEVSRRFENP

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=190, Percent_Identity=44.2105263157895, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI67782305, Length=190, Percent_Identity=44.2105263157895, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI67782309, Length=189, Percent_Identity=37.5661375661376, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1790342, Length=212, Percent_Identity=36.7924528301887, Blast_Score=138, Evalue=2e-34,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=37.5, Blast_Score=126, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17569479, Length=190, Percent_Identity=41.5789473684211, Blast_Score=152, Evalue=8e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=189, Percent_Identity=42.8571428571429, Blast_Score=152, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=200, Percent_Identity=39, Blast_Score=136, Evalue=2e-33,
Organism=Drosophila melanogaster, GI17136812, Length=190, Percent_Identity=41.5789473684211, Blast_Score=155, Evalue=1e-38,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22794; Mature: 22794

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFKLPDLPYSYNSLEPHYDQQTLKLHHSKHHQSYVNGLNNALEKLKVARENNDYNGIKH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
WQRELAFHGSGHILHTLFFNNLGPEQGNLSKSLRDQINKDFGSFEMFAAQFTNAAKTVEA
HHHHHHHCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEC
SGWAVLAWNDVLEQLLVLTLEKHQNLTVIGAKPLLVIDMWEHAYYLQYQNDRAAYINAWW
CCEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCEEEEEECCCCEEEEEHHH
EIVNWNEVSRRFENP
HCCCHHHHHHHCCCC
>Mature Secondary Structure
MNFKLPDLPYSYNSLEPHYDQQTLKLHHSKHHQSYVNGLNNALEKLKVARENNDYNGIKH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
WQRELAFHGSGHILHTLFFNNLGPEQGNLSKSLRDQINKDFGSFEMFAAQFTNAAKTVEA
HHHHHHHCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEC
SGWAVLAWNDVLEQLLVLTLEKHQNLTVIGAKPLLVIDMWEHAYYLQYQNDRAAYINAWW
CCEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCEEEEEECCCCEEEEEHHH
EIVNWNEVSRRFENP
HCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]