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The map label for this gene is xerD [C]

Identifier: 188585653

GI number: 188585653

Start: 1096369

End: 1097220

Strand: Direct

Name: xerD [C]

Synonym: Nther_1026

Alternate gene names: 188585653

Gene position: 1096369-1097220 (Clockwise)

Preceding gene: 188585650

Following gene: 188585656

Centisome position: 34.63

GC content: 28.87

Gene sequence:

>852_bases
ATGCGAGAATTTGAAAAAACCTTGAAATTAAAAGGTTATACTGAAAAAACTATAAAAGCTTATATAGGTCACATAAAACG
TTTCTTGAAAGTGGGATTAAATATAAATAATAAAGAAGATATCCAATCTCATATAATTTTTCTTCTCGAAAATAATAATT
CTCATTCCTATGTAAATCAAGCCATAAGTGCACTGAAGCTTTTAAATAATGAAATTACGAAAAAAGGTTATGTAGATGTT
CATGGAATTAAAACTTGTGTGAATCAGCAAATAAAAGTTAATAGACCTAAAAAAGAAAGGAAATTACCAAATGTTTTGAG
TCAGAAAGAAGTTTTAGAACTACTTACCGTAACAACTAATATTAAACACAAAGCTATTTTGTGCATAATTTATTCAAGTG
GTCTCAGGGTTGGTGAAGCAGTCAGGTTAAAACCAGAAGATTTAGATGGAGAGCAAAAAATAATTCATATAAAACAAGGA
AAAGGAAGGAAGGACCGTTATACTATTTTATCGGATAATGCTCTAAAAATATTAAGAAATTACTATAAAATTTATCAACC
TAAGAAATGGCTTTTTCCTGGACAAAATGAAAATCTGCATTTGAGCGAAAGATCAGTTCAAAAGATATTTCAAAAAGCTA
AGCAGAAAGCTAATATAAATAAAAAAGTATCAGTTCATTCTTTGAGACATTCGTTTGCGACTCATTTACTAGAAGCTGGA
ACTGATTTAAGGTATATTCAAAAACTGCTAGGTCATGAAAGTTCTAAAACTACTGAAATTTACACACATATTACGACTCA
AAATATTTCAAGAATTGAAAGCCCACTAGACAAGTTAATGGAGGAAATATAG

Upstream 100 bases:

>100_bases
ATCAAAAGCAATAAAAACGCTTAAACAATTATTTGTAAAAGAGAAAATTATAGATGCTATCGAAGCTACAGACCAGCTTG
ACCTAAACCAAAAGAAGATA

Downstream 100 bases:

>100_bases
TAAGACAAAACTTTAAGCTCAATATATAAAAAGCTAAAAAAGTTCAATTTGAAAAAGCTAAAAAGCCCAATAAATGTTTT
TATTAACTATTAACTTTAGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLENNNSHSYVNQAISALKLLNNEITKKGYVDV
HGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTTNIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQG
KGRKDRYTILSDNALKILRNYYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLEAG
TDLRYIQKLLGHESSKTTEIYTHITTQNISRIESPLDKLMEEI

Sequences:

>Translated_283_residues
MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLENNNSHSYVNQAISALKLLNNEITKKGYVDV
HGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTTNIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQG
KGRKDRYTILSDNALKILRNYYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLEAG
TDLRYIQKLLGHESSKTTEIYTHITTQNISRIESPLDKLMEEI
>Mature_283_residues
MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLENNNSHSYVNQAISALKLLNNEITKKGYVDV
HGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTTNIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQG
KGRKDRYTILSDNALKILRNYYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLEAG
TDLRYIQKLLGHESSKTTEIYTHITTQNISRIESPLDKLMEEI

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=197, Percent_Identity=34.5177664974619, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=29.2096219931272, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790767, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32773; Mature: 32773

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLENNNSHSYVNQ
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEEECCCCHHHHHH
AISALKLLNNEITKKGYVDVHGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTTN
HHHHHHHHHHHHCCCCCEEHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
IKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQGKGRKDRYTILSDNALKILRN
CCCCEEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHH
YYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLEAG
HHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
TDLRYIQKLLGHESSKTTEIYTHITTQNISRIESPLDKLMEEI
CCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLENNNSHSYVNQ
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEEECCCCHHHHHH
AISALKLLNNEITKKGYVDVHGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTTN
HHHHHHHHHHHHCCCCCEEHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
IKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQGKGRKDRYTILSDNALKILRN
CCCCEEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHH
YYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLEAG
HHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
TDLRYIQKLLGHESSKTTEIYTHITTQNISRIESPLDKLMEEI
CCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]