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The map label for this gene is yukF [H]

Identifier: 188585650

GI number: 188585650

Start: 1092442

End: 1093998

Strand: Direct

Name: yukF [H]

Synonym: Nther_1023

Alternate gene names: 188585650

Gene position: 1092442-1093998 (Clockwise)

Preceding gene: 188585647

Following gene: 188585653

Centisome position: 34.51

GC content: 30.25

Gene sequence:

>1557_bases
GTGAGTATTAATATTGACATTATCCAGGCGGAGCTAAGCAGGTTAAATAAATATAATTTAAAGCTGATCAAAAATTGCTC
AAGGCATGTTCGATTAAAATCAGCAAAATTAGTTACTGGCATCAATATGGAGTACGAAAAGAATATTATTTATGTTGGAA
CTGCCTCTATGATTCCACAGGACCTTTATCAAATAGAAGGGATAAACCTTGTTGTTATTAATGATTATGAGGATTTGGAG
TTTGACAATTTGAATACAAAAGGAGATATTATTGAGGTTGATGAAAAAGCAGAACTTTTTACGCTTTTCAATGATGTACA
AAATATCTTTATTTCAATAAATCGTTATCAAGAAAGCTCCGCAGCCCTGTTAAATTCACTAATTAGGGGGAGGGGATTAA
ATTATATTGTAAAAATAGGATCACAAATTTTAGGTAATCCAGTAATACTTGCAGATAGCTCGTATAAACTTTTGGCATAT
TATGCGGAAAATGAAGTAATTGACCCTGTGTGGAAAGATCTAACAACAAAAGGGTATTGCTCTCACAATTTTGTTAATTT
ATTTAAAAGACAAAAGTTAATCGAAAAGGTTGCAAAAAGCCCTGAACCAATTTTAGTTAAAACTGGATTGGCAAAAGATA
TCCGTAGATACTTAGGTAAAATTTTAATAGATGATAAAATAGTGGGTCATTTAGGCGTATTAGAATATGATCAAAATTTT
AAAGAGGAAGATCACGAGATCACAAAGCTTCTTTGTGATGTCATTTCTTCTGAAATGCAAAAAAACAATTTGTTTAGAAA
TTTTAAGGGAGTTATGTATGAAAGTTTGATACTTGACCTTTTGGATAAGAGGGTTAATGATAGGAGAATAATGGAAGAAA
GGTTAAAATCTTCACAATGGGAGCCCTCTGATTACTATAAAGTTGTTACAATAAATGTGCCCAAGGATAATACTACTTCT
CATATTGTGAACTACCTCAGAGATAGAATTGAGAGACTGATTCCATTTTGTAAGTCCGTATGTTACGAGGGTAATATAGT
TTTATTGCTCGATTTTAAAGAAACTGATGATATAGAAAATATCGACAGGAAATTAAAAGATTTTTTAAATTCTAATAATC
TCACAGCAGGGGTTAGCTTTACATTTAATGATTTAATGAAATTGGGGATTTATTATAACCAATCTGTAAATGCGCTTCAA
TTTGGTGAAACTTTAGATACAAAAGGACCATTGTTTTATTTTGAGTCCTATTATATATATAATCTTCTGTCAGAGGTATC
AACTCGTCAAAATTTAAGTAGTTACTGCCATCCTGCTATATATAAAATCATAGCGTATGATAAAACAAATGGTACTGATT
ATTATAAGACTTTATATGAGTACTTCTTAAACTGCAATAATATAACAATGACAGCTAAAAAACTATATATCCACAGAAAC
ACTATGGCACATCGGTTAGAAAAATTGAAAGAAATAACTGGACTTAATTTTGATGATGGAGAACAATGTTTTCGTTTATT
TCTTTCATATAAAATACTTGAGCTTGAAAAAATTTAA

Upstream 100 bases:

>100_bases
TCAAGCTTATCATAACTGAATTTTCTGTACATTGTTGTAGTTAACGAAAATAGCAGAGTGATATTGTTCATTTTGCATCC
TATAAAATGAGGTGAGCTAT

Downstream 100 bases:

>100_bases
TACAACGATTTTTAAATTAAAATTCATTGAAACCAGTAGATCCGGAAGCACACACAGCTCTGTTAGCCATAAAATACTCT
TATTTATACATTACTCAATA

Product: putative transcriptional regulator, PucR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MSINIDIIQAELSRLNKYNLKLIKNCSRHVRLKSAKLVTGINMEYEKNIIYVGTASMIPQDLYQIEGINLVVINDYEDLE
FDNLNTKGDIIEVDEKAELFTLFNDVQNIFISINRYQESSAALLNSLIRGRGLNYIVKIGSQILGNPVILADSSYKLLAY
YAENEVIDPVWKDLTTKGYCSHNFVNLFKRQKLIEKVAKSPEPILVKTGLAKDIRRYLGKILIDDKIVGHLGVLEYDQNF
KEEDHEITKLLCDVISSEMQKNNLFRNFKGVMYESLILDLLDKRVNDRRIMEERLKSSQWEPSDYYKVVTINVPKDNTTS
HIVNYLRDRIERLIPFCKSVCYEGNIVLLLDFKETDDIENIDRKLKDFLNSNNLTAGVSFTFNDLMKLGIYYNQSVNALQ
FGETLDTKGPLFYFESYYIYNLLSEVSTRQNLSSYCHPAIYKIIAYDKTNGTDYYKTLYEYFLNCNNITMTAKKLYIHRN
TMAHRLEKLKEITGLNFDDGEQCFRLFLSYKILELEKI

Sequences:

>Translated_518_residues
MSINIDIIQAELSRLNKYNLKLIKNCSRHVRLKSAKLVTGINMEYEKNIIYVGTASMIPQDLYQIEGINLVVINDYEDLE
FDNLNTKGDIIEVDEKAELFTLFNDVQNIFISINRYQESSAALLNSLIRGRGLNYIVKIGSQILGNPVILADSSYKLLAY
YAENEVIDPVWKDLTTKGYCSHNFVNLFKRQKLIEKVAKSPEPILVKTGLAKDIRRYLGKILIDDKIVGHLGVLEYDQNF
KEEDHEITKLLCDVISSEMQKNNLFRNFKGVMYESLILDLLDKRVNDRRIMEERLKSSQWEPSDYYKVVTINVPKDNTTS
HIVNYLRDRIERLIPFCKSVCYEGNIVLLLDFKETDDIENIDRKLKDFLNSNNLTAGVSFTFNDLMKLGIYYNQSVNALQ
FGETLDTKGPLFYFESYYIYNLLSEVSTRQNLSSYCHPAIYKIIAYDKTNGTDYYKTLYEYFLNCNNITMTAKKLYIHRN
TMAHRLEKLKEITGLNFDDGEQCFRLFLSYKILELEKI
>Mature_517_residues
SINIDIIQAELSRLNKYNLKLIKNCSRHVRLKSAKLVTGINMEYEKNIIYVGTASMIPQDLYQIEGINLVVINDYEDLEF
DNLNTKGDIIEVDEKAELFTLFNDVQNIFISINRYQESSAALLNSLIRGRGLNYIVKIGSQILGNPVILADSSYKLLAYY
AENEVIDPVWKDLTTKGYCSHNFVNLFKRQKLIEKVAKSPEPILVKTGLAKDIRRYLGKILIDDKIVGHLGVLEYDQNFK
EEDHEITKLLCDVISSEMQKNNLFRNFKGVMYESLILDLLDKRVNDRRIMEERLKSSQWEPSDYYKVVTINVPKDNTTSH
IVNYLRDRIERLIPFCKSVCYEGNIVLLLDFKETDDIENIDRKLKDFLNSNNLTAGVSFTFNDLMKLGIYYNQSVNALQF
GETLDTKGPLFYFESYYIYNLLSEVSTRQNLSSYCHPAIYKIIAYDKTNGTDYYKTLYEYFLNCNNITMTAKKLYIHRNT
MAHRLEKLKEITGLNFDDGEQCFRLFLSYKILELEKI

Specific function: Unknown

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010312 [H]

Pfam domain/function: PF06018 CodY [H]

EC number: NA

Molecular weight: Translated: 60302; Mature: 60171

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINIDIIQAELSRLNKYNLKLIKNCSRHVRLKSAKLVTGINMEYEKNIIYVGTASMIPQ
CCEEEEEHHHHHHHCCCCCHHHHHCCHHHHEECCCCEEECCCCEEECCEEEEECHHHCHH
DLYQIEGINLVVINDYEDLEFDNLNTKGDIIEVDEKAELFTLFNDVQNIFISINRYQESS
HHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEEHHCHHH
AALLNSLIRGRGLNYIVKIGSQILGNPVILADSSYKLLAYYAENEVIDPVWKDLTTKGYC
HHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCC
SHNFVNLFKRQKLIEKVAKSPEPILVKTGLAKDIRRYLGKILIDDKIVGHLGVLEYDQNF
CHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHCCEECCCCCC
KEEDHEITKLLCDVISSEMQKNNLFRNFKGVMYESLILDLLDKRVNDRRIMEERLKSSQW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
EPSDYYKVVTINVPKDNTTSHIVNYLRDRIERLIPFCKSVCYEGNIVLLLDFKETDDIEN
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
IDRKLKDFLNSNNLTAGVSFTFNDLMKLGIYYNQSVNALQFGETLDTKGPLFYFESYYIY
HHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEHHHHHH
NLLSEVSTRQNLSSYCHPAIYKIIAYDKTNGTDYYKTLYEYFLNCNNITMTAKKLYIHRN
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCEEEEEHHHEEEHH
TMAHRLEKLKEITGLNFDDGEQCFRLFLSYKILELEKI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SINIDIIQAELSRLNKYNLKLIKNCSRHVRLKSAKLVTGINMEYEKNIIYVGTASMIPQ
CEEEEEHHHHHHHCCCCCHHHHHCCHHHHEECCCCEEECCCCEEECCEEEEECHHHCHH
DLYQIEGINLVVINDYEDLEFDNLNTKGDIIEVDEKAELFTLFNDVQNIFISINRYQESS
HHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEEHHCHHH
AALLNSLIRGRGLNYIVKIGSQILGNPVILADSSYKLLAYYAENEVIDPVWKDLTTKGYC
HHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCC
SHNFVNLFKRQKLIEKVAKSPEPILVKTGLAKDIRRYLGKILIDDKIVGHLGVLEYDQNF
CHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHCCEECCCCCC
KEEDHEITKLLCDVISSEMQKNNLFRNFKGVMYESLILDLLDKRVNDRRIMEERLKSSQW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
EPSDYYKVVTINVPKDNTTSHIVNYLRDRIERLIPFCKSVCYEGNIVLLLDFKETDDIEN
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
IDRKLKDFLNSNNLTAGVSFTFNDLMKLGIYYNQSVNALQFGETLDTKGPLFYFESYYIY
HHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEHHHHHH
NLLSEVSTRQNLSSYCHPAIYKIIAYDKTNGTDYYKTLYEYFLNCNNITMTAKKLYIHRN
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCEEEEEHHHEEEHH
TMAHRLEKLKEITGLNFDDGEQCFRLFLSYKILELEKI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]