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The map label for this gene is opuBB [H]

Identifier: 188584760

GI number: 188584760

Start: 141500

End: 142150

Strand: Direct

Name: opuBB [H]

Synonym: Nther_0118

Alternate gene names: 188584760

Gene position: 141500-142150 (Clockwise)

Preceding gene: 188584759

Following gene: 188584761

Centisome position: 4.47

GC content: 34.41

Gene sequence:

>651_bases
ATGGGGATTAGCACCTCTATATTAGAGTTTTGGCAGTATTTAGTTGACCGGCAGGATATGTTTTTGAATTTATTTTACGA
GCACACTCGATTAATTTTAATTACTGCTATTATATCGATAATTATTGGTGTTATTTTGGGGTTGGTTTCTACTTATTATA
AAAGTTTAGCAAACATAATTTTGACTGTAACTCAAATTCTAATGACAATTCCTAGTTTGGCTATGATTGCTATTATTTTC
CCATTGTTTGGTATAGGTCCAACGACAGGTATAGTAGCCTTAGTGCTTTACTCTTTATTACCTATAGTTAGAAATACTTA
TACTGGTATAAACGAACTCGATGCTAACGTATTGGAAGCAGCTAAAGGTATGGGGATGTCGGAGAGAAAAATATTACTGA
AAATCAAAATACCTTTAGCATTACCTGTAATAATTGCAGGAATCCGAACAGCTGTTGTAATGGTAGTAGGTATTGGAGCA
ATCGCTAGCTTGATAGGTGCTGGAGGATTAGGTGATTTTATTTTTAGAGGTATATCTAGGGATTTCCCGTTTATGATTTT
AGCTGGTGCTATTGGAGTATCAATATTGGCAATAGCTTTAGATTTACTCCTTAGTTGGCTAGAACAAAAGGTGATAGCGA
GACAAAGTTAA

Upstream 100 bases:

>100_bases
ATAAATTGTTAGTCAAAGAGGTAATCGGATCATGCGATAAATGTCGTAAAATGATAAAATATGTTATAAAAAGTAAAGTA
TTATTATCGGAGGTGGATTT

Downstream 100 bases:

>100_bases
TAATTTTCGCTGATAGTGAAAATTGAATTAAAGGAATTATATTGAAAAAGAGATAGGAGAAGGTACAGGAGGTTTGGTTA
TATGATTAAATTTGAGGATG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MGISTSILEFWQYLVDRQDMFLNLFYEHTRLILITAIISIIIGVILGLVSTYYKSLANIILTVTQILMTIPSLAMIAIIF
PLFGIGPTTGIVALVLYSLLPIVRNTYTGINELDANVLEAAKGMGMSERKILLKIKIPLALPVIIAGIRTAVVMVVGIGA
IASLIGAGGLGDFIFRGISRDFPFMILAGAIGVSILAIALDLLLSWLEQKVIARQS

Sequences:

>Translated_216_residues
MGISTSILEFWQYLVDRQDMFLNLFYEHTRLILITAIISIIIGVILGLVSTYYKSLANIILTVTQILMTIPSLAMIAIIF
PLFGIGPTTGIVALVLYSLLPIVRNTYTGINELDANVLEAAKGMGMSERKILLKIKIPLALPVIIAGIRTAVVMVVGIGA
IASLIGAGGLGDFIFRGISRDFPFMILAGAIGVSILAIALDLLLSWLEQKVIARQS
>Mature_215_residues
GISTSILEFWQYLVDRQDMFLNLFYEHTRLILITAIISIIIGVILGLVSTYYKSLANIILTVTQILMTIPSLAMIAIIFP
LFGIGPTTGIVALVLYSLLPIVRNTYTGINELDANVLEAAKGMGMSERKILLKIKIPLALPVIIAGIRTAVVMVVGIGAI
ASLIGAGGLGDFIFRGISRDFPFMILAGAIGVSILAIALDLLLSWLEQKVIARQS

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=206, Percent_Identity=34.4660194174757, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1788449, Length=197, Percent_Identity=37.0558375634518, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1789033, Length=165, Percent_Identity=37.5757575757576, Blast_Score=107, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23331; Mature: 23200

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGISTSILEFWQYLVDRQDMFLNLFYEHTRLILITAIISIIIGVILGLVSTYYKSLANII
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTVTQILMTIPSLAMIAIIFPLFGIGPTTGIVALVLYSLLPIVRNTYTGINELDANVLEA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AKGMGMSERKILLKIKIPLALPVIIAGIRTAVVMVVGIGAIASLIGAGGLGDFIFRGISR
HHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
DFPFMILAGAIGVSILAIALDLLLSWLEQKVIARQS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GISTSILEFWQYLVDRQDMFLNLFYEHTRLILITAIISIIIGVILGLVSTYYKSLANII
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTVTQILMTIPSLAMIAIIFPLFGIGPTTGIVALVLYSLLPIVRNTYTGINELDANVLEA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AKGMGMSERKILLKIKIPLALPVIIAGIRTAVVMVVGIGAIASLIGAGGLGDFIFRGISR
HHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
DFPFMILAGAIGVSILAIALDLLLSWLEQKVIARQS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]