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The map label for this gene is rplY

Identifier: 188584704

GI number: 188584704

Start: 76689

End: 77336

Strand: Direct

Name: rplY

Synonym: Nther_0062

Alternate gene names: 188584704

Gene position: 76689-77336 (Clockwise)

Preceding gene: 188584703

Following gene: 188584705

Centisome position: 2.42

GC content: 36.42

Gene sequence:

>648_bases
ATGGATAGAAAAGAATTACAGGTAAAAGAGCGGACAGTGACTAGAAAAAGTGAAGTTAAGAAATTAAGAACTAACAATGA
AATTCCAGCTGTTTTATATGGCAAAAACATCGAAAGTAAAAAATTAAGCATTGAAAAAAGAGAACTGCTAGATGCATTAT
CTACCGCTGCTGGAGATAACGTTCTATTGGACTTAAAACTAGATAATGGAGAATCTTATCCAGCAATTTTTAAGGAAATT
CAAAAAGATCCAATAAAAGGGTTTTTTATCCACATTGACTTCCATACTATTGACTTAAAAGAAACCTTACAAGTTAGTGT
GCCACTTAACATTGAAGGTGAGCCTGTGGGTGTTGAAAATGGAGGTATTCCACAGTATCAGCTTAGAGAAATTGAAATCG
AATGTCTACCTACCCAAATACCAGATCATATTGAGGTCGACGTTAGTAATATAGATCTAAACGAAAGCATTAATGTAGGT
GATTTACCACTACCAGAAGGCTCAGAGCTGGTTACTGAACCCGAAGAAACAGTCATGTCAGTAGTTGCGCCAGAAACGGA
AGAAGAACCGGATACAGAAGAAGATGAAGAAGGCGAAGAAGACGTTGAAGAAGAAAGTGAAGAAGAGGAAGAAGAATCTG
AAGAGTAA

Upstream 100 bases:

>100_bases
AAGATGACTAATGTTTGACTAATTTCGCAAAAATAGATATACTAATGTTTGGTATATTTTTAACATAGATATTAAGCGCG
AAAAGAAAGGGGTATTATAG

Downstream 100 bases:

>100_bases
TTGGAACAAGAGGGCGCATGTAAATGCGCCCTTTTAAATTGGTATTAAATGAACTAGGAAACTATGGGAGGTATTATATG
AAGTTAATAGCCGGCCTTGG

Product: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MDRKELQVKERTVTRKSEVKKLRTNNEIPAVLYGKNIESKKLSIEKRELLDALSTAAGDNVLLDLKLDNGESYPAIFKEI
QKDPIKGFFIHIDFHTIDLKETLQVSVPLNIEGEPVGVENGGIPQYQLREIEIECLPTQIPDHIEVDVSNIDLNESINVG
DLPLPEGSELVTEPEETVMSVVAPETEEEPDTEEDEEGEEDVEEESEEEEEESEE

Sequences:

>Translated_215_residues
MDRKELQVKERTVTRKSEVKKLRTNNEIPAVLYGKNIESKKLSIEKRELLDALSTAAGDNVLLDLKLDNGESYPAIFKEI
QKDPIKGFFIHIDFHTIDLKETLQVSVPLNIEGEPVGVENGGIPQYQLREIEIECLPTQIPDHIEVDVSNIDLNESINVG
DLPLPEGSELVTEPEETVMSVVAPETEEEPDTEEDEEGEEDVEEESEEEEEESEE
>Mature_215_residues
MDRKELQVKERTVTRKSEVKKLRTNNEIPAVLYGKNIESKKLSIEKRELLDALSTAAGDNVLLDLKLDNGESYPAIFKEI
QKDPIKGFFIHIDFHTIDLKETLQVSVPLNIEGEPVGVENGGIPQYQLREIEIECLPTQIPDHIEVDVSNIDLNESINVG
DLPLPEGSELVTEPEETVMSVVAPETEEEPDTEEDEEGEEDVEEESEEEEEESEE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_NATTJ (B2A3N5)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001916249.1
- ProteinModelPortal:   B2A3N5
- SMR:   B2A3N5
- GeneID:   6317195
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_0062
- HOGENOM:   HBG731986
- OMA:   LNIVRHE
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 24268; Mature: 24268

Theoretical pI: Translated: 3.86; Mature: 3.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKELQVKERTVTRKSEVKKLRTNNEIPAVLYGKNIESKKLSIEKRELLDALSTAAGDN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
VLLDLKLDNGESYPAIFKEIQKDPIKGFFIHIDFHTIDLKETLQVSVPLNIEGEPVGVEN
EEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCC
GGIPQYQLREIEIECLPTQIPDHIEVDVSNIDLNESINVGDLPLPEGSELVTEPEETVMS
CCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
VVAPETEEEPDTEEDEEGEEDVEEESEEEEEESEE
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRKELQVKERTVTRKSEVKKLRTNNEIPAVLYGKNIESKKLSIEKRELLDALSTAAGDN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
VLLDLKLDNGESYPAIFKEIQKDPIKGFFIHIDFHTIDLKETLQVSVPLNIEGEPVGVEN
EEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCC
GGIPQYQLREIEIECLPTQIPDHIEVDVSNIDLNESINVGDLPLPEGSELVTEPEETVMS
CCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
VVAPETEEEPDTEEDEEGEEDVEEESEEEEEESEE
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA