| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527557
Identifier: 188527557
GI number: 188527557
Start: 761895
End: 763367
Strand: Reverse
Name: 188527557
Synonym: HPSH_03895
Alternate gene names: NA
Gene position: 763367-761895 (Counterclockwise)
Preceding gene: 188527558
Following gene: 188527555
Centisome position: 47.46
GC content: 39.65
Gene sequence:
>1473_bases ATGAATAAAGAAACCCGATTTTATAATCTTTTTTCCTTGGCGATTTTAGGGATTTTAATCTTTCCTGTGGGTTTGGCGAA TTTTTATTTTGGCTATGTTTTGAAAGATTCGCCTTGCATTTTTTGCTGGGCGCAACGCATCAACATGATTTTAATAGGGG CTGTGGCGCTTTTGGTGGTGCGTTTTGGGTTTAAGCCTAAATACATCGCCTTGCTATTACTCATGGCTAGTAGCGGGTTA TATGAGAGCTTTTATCATACCAGTAGCCATGCATTAGAAGATGTGGGGCAAGGCTTTGCGCTCGCTATTTTAGGATTGCA CACGCAGTTTTGGGCGCTTTTTGTCTTTTTTAGCGTGGTGGTGCTTTTAGCGGTTTTGCTCTTTTTTGCCCCTAATGCCC AACTTTTTAAAGATTATCCATTAAACACGCTCCAAAAAAGCGCTTTTTATGTTTTCTTTATTGTGGTGGGTTCTAACGCC GTGCAAGCGTTTTTCTCTACTGGGCCTTTCCCTTACATAGGGCAAAGCGATCCGGTGCGTTTTTCTTGGAATTTGAAAGA ATCTGTCTGGTCTATGGAAAATTGGAATCATTTGAAATTCCCAAGAAGCGTTTTGGGCAGAAGAGATGTGGGTGAGCCTT TGAAATTGAGCGCTTTGCCTAAAGATAATGATTATGAGCACTCGCCTTTAGAAATTACAAAAGCGTTGGAGATTGGAAAA AAAGAAGAGCTTTTTTTAAAACTGAACGGAGCGATCACGGATTTGAGTTTCAATGAAGATGGGGCGATCCTTACCACAGA AAACCAAGGCCTTTATCTTGTGGGTAACGATTTGAAAACCATTCATAGCTATATGGTGCTAGATAGCTATTATAGCGCGA CGGTGGGGTCGTTCGTGGGGGCGGATTTTAACGAAGATGAAAACATTGTGATCATGGGCAATAATAAAACGAGCGTAGAA ATCACTCCTAACAAAAACGCTAACGCGCTTAAAAACTTCCCTTATTTTTTAGAAGGGGCTAACTCTTTTGATGAAGTGGA ACGCAGCCGCTTGAAAACTTCTAGGGCGAAAAACTATTATGTTAGCGCTGCAAGAAGAGGGGCTAAATTCACTTATTTAA TCACCGCTCCTAACAAGCGTTATAAGGATTTGATTATCATCTCCATGCTTGATAGCGACAAACAGGTGCATGGGGAGTTT TTACTTGAATTAGGTAATGCCAAACTTAAAGAAAAAAGGAAACTGGGCGAGTTAGTTATCAGCGCGCTAGCTTTAAAGGA TAATAAGCTTTATGCGTTCAGTAAGGAATTTAACACGCTTTTAGTTATAAACCCTACAAAAGAAGAGATTCTTGAAGTTT ATGGCTTGCCTAAAGAGATTAAAAATATCAGCGCTGGAGGGTTTAGGGATAATGAGCTTATCCTTGTGAGTTATGAGAAT CATAAAAATATTCTCTATACTCTTAATTTTTAA
Upstream 100 bases:
>100_bases GGGCGTTTGGGATTTTGATTGTGGTGTGGTTGGTGGAGCTTATTATTTTTATAGCCCACAGCTCTAGCGTTTTGCCTAAT ATGAATTTATAGGGGGATGC
Downstream 100 bases:
>100_bases ACTCTTTTAAAGCTACTTTTTTCTAATATATTAACGCATTAGAAGATGGTCGCTATTTTAGAATAGAGGAAAGTCCGGGC TACATTAGACAAAATTCCAT
Product: DsbB-like protein
Products: NA
Alternate protein names: DsbB Family Disulfide Bond Formation Protein; Disulfide Bond Formation Protein DsbB Family; Disulfide Bond Formation Protein; Disulfide Bond Formation Protein DsbB; Dsbb-Like Protein
Number of amino acids: Translated: 490; Mature: 490
Protein sequence:
>490_residues MNKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVVRFGFKPKYIALLLLMASSGL YESFYHTSSHALEDVGQGFALAILGLHTQFWALFVFFSVVVLLAVLLFFAPNAQLFKDYPLNTLQKSAFYVFFIVVGSNA VQAFFSTGPFPYIGQSDPVRFSWNLKESVWSMENWNHLKFPRSVLGRRDVGEPLKLSALPKDNDYEHSPLEITKALEIGK KEELFLKLNGAITDLSFNEDGAILTTENQGLYLVGNDLKTIHSYMVLDSYYSATVGSFVGADFNEDENIVIMGNNKTSVE ITPNKNANALKNFPYFLEGANSFDEVERSRLKTSRAKNYYVSAARRGAKFTYLITAPNKRYKDLIIISMLDSDKQVHGEF LLELGNAKLKEKRKLGELVISALALKDNKLYAFSKEFNTLLVINPTKEEILEVYGLPKEIKNISAGGFRDNELILVSYEN HKNILYTLNF
Sequences:
>Translated_490_residues MNKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVVRFGFKPKYIALLLLMASSGL YESFYHTSSHALEDVGQGFALAILGLHTQFWALFVFFSVVVLLAVLLFFAPNAQLFKDYPLNTLQKSAFYVFFIVVGSNA VQAFFSTGPFPYIGQSDPVRFSWNLKESVWSMENWNHLKFPRSVLGRRDVGEPLKLSALPKDNDYEHSPLEITKALEIGK KEELFLKLNGAITDLSFNEDGAILTTENQGLYLVGNDLKTIHSYMVLDSYYSATVGSFVGADFNEDENIVIMGNNKTSVE ITPNKNANALKNFPYFLEGANSFDEVERSRLKTSRAKNYYVSAARRGAKFTYLITAPNKRYKDLIIISMLDSDKQVHGEF LLELGNAKLKEKRKLGELVISALALKDNKLYAFSKEFNTLLVINPTKEEILEVYGLPKEIKNISAGGFRDNELILVSYEN HKNILYTLNF >Mature_490_residues MNKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVVRFGFKPKYIALLLLMASSGL YESFYHTSSHALEDVGQGFALAILGLHTQFWALFVFFSVVVLLAVLLFFAPNAQLFKDYPLNTLQKSAFYVFFIVVGSNA VQAFFSTGPFPYIGQSDPVRFSWNLKESVWSMENWNHLKFPRSVLGRRDVGEPLKLSALPKDNDYEHSPLEITKALEIGK KEELFLKLNGAITDLSFNEDGAILTTENQGLYLVGNDLKTIHSYMVLDSYYSATVGSFVGADFNEDENIVIMGNNKTSVE ITPNKNANALKNFPYFLEGANSFDEVERSRLKTSRAKNYYVSAARRGAKFTYLITAPNKRYKDLIIISMLDSDKQVHGEF LLELGNAKLKEKRKLGELVISALALKDNKLYAFSKEFNTLLVINPTKEEILEVYGLPKEIKNISAGGFRDNELILVSYEN HKNILYTLNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55392; Mature: 55392
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEHHHHCCHHHHHHHHHHH RFGFKPKYIALLLLMASSGLYESFYHTSSHALEDVGQGFALAILGLHTQFWALFVFFSVV HCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH VLLAVLLFFAPNAQLFKDYPLNTLQKSAFYVFFIVVGSNAVQAFFSTGPFPYIGQSDPVR HHHHHHHHHCCCCHHHHCCCCHHHHCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCCCEE FSWNLKESVWSMENWNHLKFPRSVLGRRDVGEPLKLSALPKDNDYEHSPLEITKALEIGK EEECHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCC KEELFLKLNGAITDLSFNEDGAILTTENQGLYLVGNDLKTIHSYMVLDSYYSATVGSFVG CCEEEEEECCEEEEEEECCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHC ADFNEDENIVIMGNNKTSVEITPNKNANALKNFPYFLEGANSFDEVERSRLKTSRAKNYY CCCCCCCCEEEEECCCEEEEECCCCCCCHHHCCCCEECCCCCHHHHHHHHHHHHHCCHHE VSAARRGAKFTYLITAPNKRYKDLIIISMLDSDKQVHGEFLLELGNAKLKEKRKLGELVI EEHHCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHH SALALKDNKLYAFSKEFNTLLVINPTKEEILEVYGLPKEIKNISAGGFRDNELILVSYEN HHHHCCCCEEEEEECCCCEEEEECCCHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEECC HKNILYTLNF CCCEEEEECC >Mature Secondary Structure MNKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEHHHHCCHHHHHHHHHHH RFGFKPKYIALLLLMASSGLYESFYHTSSHALEDVGQGFALAILGLHTQFWALFVFFSVV HCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH VLLAVLLFFAPNAQLFKDYPLNTLQKSAFYVFFIVVGSNAVQAFFSTGPFPYIGQSDPVR HHHHHHHHHCCCCHHHHCCCCHHHHCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCCCEE FSWNLKESVWSMENWNHLKFPRSVLGRRDVGEPLKLSALPKDNDYEHSPLEITKALEIGK EEECHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCC KEELFLKLNGAITDLSFNEDGAILTTENQGLYLVGNDLKTIHSYMVLDSYYSATVGSFVG CCEEEEEECCEEEEEEECCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHC ADFNEDENIVIMGNNKTSVEITPNKNANALKNFPYFLEGANSFDEVERSRLKTSRAKNYY CCCCCCCCEEEEECCCEEEEECCCCCCCHHHCCCCEECCCCCHHHHHHHHHHHHHCCHHE VSAARRGAKFTYLITAPNKRYKDLIIISMLDSDKQVHGEFLLELGNAKLKEKRKLGELVI EEHHCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHH SALALKDNKLYAFSKEFNTLLVINPTKEEILEVYGLPKEIKNISAGGFRDNELILVSYEN HHHHCCCCEEEEEECCCCEEEEECCCHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEECC HKNILYTLNF CCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA