Click here to switch to the map view.

The map label for this gene is 188527491

Identifier: 188527491

GI number: 188527491

Start: 681151

End: 682167

Strand: Reverse

Name: 188527491

Synonym: HPSH_03555

Alternate gene names: NA

Gene position: 682167-681151 (Counterclockwise)

Preceding gene: 188527492

Following gene: 188527490

Centisome position: 42.41

GC content: 34.32

Gene sequence:

>1017_bases
GTGCAACACTTTAATTTCCTCTATAAAGATTCTTTATTTTCTATCGCTTTATTCACTTTCATTATCGCTCTTGTGATTTT
ATTAGAACAGGCTAGGGCGTATTTCACCCAAAAGAAAAACAAAAAATTTTTACAAAAATTCGCCCAAAATCAAAACGCTT
ATGCGGGCAGTGAGAATTTAAGCGAGCTTTTAAAGCATGCTAAAATTTCTAGTTTGATGTTTTTAGCCAGAGCGTATTCT
AAAGCGGATGTCCAAATGAGTATTGAAATCTTAAAAGGGCTTTTGAATCGCCCCTTAAAAGATGAAGAAAAAATCGCTGT
TTTAGATTTATTAGCCAAAAATTATTTTAGTGTGGGGTATTTGCAAAAAACAAAAGACACCGTGAAAGAAATTTTGCGCT
TTTCCCCAAGGAATGTGGAAGCGTTGTTGAAACTTTTGCATGCGTATGAATTAGAAAAAGATTATTCAAAGGCTTTAGAA
ACTTTGGAATGTTTGGAAGAATTAGAAACGCCTGAAATTGAAACGATTAAAAATTATCTTTATCTCATGCATTTAATAGA
GAATAAAGAAGATGCGGCTAAAATCTTGCATGTTTCAAAAGCGTCGTTAGATTTGAAAAAAATCGCCCTAAATCACTTAA
AATCGCATGATGAAAATCTTTTTTGGCAAGAAATTGATGCAACCGATCGTTTAGAAAATATGATCGATCTTTTATGGGAT
ATGAATATCCCTGCTTTTATTTTAGAAAAACATGCCATTTTGCAAGACATCGCGCGATCTCAAGGGTTGCTTTTGGATAA
CAAACCTTGCCAAGTTTTTGAATTAGAGGTTTTACGCGCTCTATTGAATAGCCCTATAAAAGCGAGTCTGACTTTTGAAT
ACCGCTGCAAGCATTGCAAACAAATCTTTCCTTTTGAAAGCCATAGGTGTCCTGTGTGTTACCAGTTAGCGTTTATGGAT
ATGGTGCTTAAAATTTCTAAAGAAAGCTATGGGAGTGGATTGGATGCAAGAAATTGA

Upstream 100 bases:

>100_bases
AAATTAGTGGAAGAATCTAAAGATAAGATTTTAGAAGAGCATTTTGAAAAATTGCGCGTTAAGTCTAGGATTGTGATGAT
TAGAGAGTGATTTTTAGATT

Downstream 100 bases:

>100_bases
AATTTTTTGCGATGGCTCTTCTTTAGGCAATCCCGGGCCAGGCGGTTATGCGGCGATTTTACGCTATAAAGATAAAGAAA
AAATCATCAGTGGAGGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: TPR Repeat Protein; SpoOJ Regulator; Tetratricopeptide Repeat-Containing Protein; Inner Membrane Protein; Tetratricopeptide Repeat

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENLSELLKHAKISSLMFLARAYS
KADVQMSIEILKGLLNRPLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRNVEALLKLLHAYELEKDYSKALE
TLECLEELETPEIETIKNYLYLMHLIENKEDAAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATDRLENMIDLLWD
MNIPAFILEKHAILQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKASLTFEYRCKHCKQIFPFESHRCPVCYQLAFMD
MVLKISKESYGSGLDARN

Sequences:

>Translated_338_residues
MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENLSELLKHAKISSLMFLARAYS
KADVQMSIEILKGLLNRPLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRNVEALLKLLHAYELEKDYSKALE
TLECLEELETPEIETIKNYLYLMHLIENKEDAAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATDRLENMIDLLWD
MNIPAFILEKHAILQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKASLTFEYRCKHCKQIFPFESHRCPVCYQLAFMD
MVLKISKESYGSGLDARN
>Mature_338_residues
MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENLSELLKHAKISSLMFLARAYS
KADVQMSIEILKGLLNRPLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRNVEALLKLLHAYELEKDYSKALE
TLECLEELETPEIETIKNYLYLMHLIENKEDAAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATDRLENMIDLLWD
MNIPAFILEKHAILQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKASLTFEYRCKHCKQIFPFESHRCPVCYQLAFMD
MVLKISKESYGSGLDARN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39219; Mature: 39219

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50293 TPR_REGION ; PS00327 BACTERIAL_OPSIN_RET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
SELLKHAKISSLMFLARAYSKADVQMSIEILKGLLNRPLKDEEKIAVLDLLAKNYFSVGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LQKTKDTVKEILRFSPRNVEALLKLLHAYELEKDYSKALETLECLEELETPEIETIKNYL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YLMHLIENKEDAAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATDRLENMIDLLWD
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHC
MNIPAFILEKHAILQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKASLTFEYRCKHCK
CCCCHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
QIFPFESHRCPVCYQLAFMDMVLKISKESYGSGLDARN
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
SELLKHAKISSLMFLARAYSKADVQMSIEILKGLLNRPLKDEEKIAVLDLLAKNYFSVGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LQKTKDTVKEILRFSPRNVEALLKLLHAYELEKDYSKALETLECLEELETPEIETIKNYL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YLMHLIENKEDAAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATDRLENMIDLLWD
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHC
MNIPAFILEKHAILQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKASLTFEYRCKHCK
CCCCHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
QIFPFESHRCPVCYQLAFMDMVLKISKESYGSGLDARN
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA