| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is coaX [H]
Identifier: 188527293
GI number: 188527293
Start: 482545
End: 483216
Strand: Direct
Name: coaX [H]
Synonym: HPSH_02500
Alternate gene names: 188527293
Gene position: 482545-483216 (Clockwise)
Preceding gene: 188527292
Following gene: 188527294
Centisome position: 30.0
GC content: 39.43
Gene sequence:
>672_bases ATGCCAGCTAGGCAATCTTTTACAGATTTGAAAAACCTGGTTTTATGCGATATAGGCAACACGCGCATCCATTTCGCGCA AAATTATCAGCTCTTTTCAAGCGCTAAAGAAGATTTAAAGCGTTTGGGTATTCAAAAGGAAATTTTTTACATTAGCGTGA ATGAAGAAAATGAAAAAGCCCTTTTAAATTGTTACCCTAACGCTAAAAATATTGCAGGATTTTTTCATTTAGAAACCGAC TATATAGGGCTTGGGATAGACCGGCAAATGGCGTGTCTAGCGGTAAATAATGGCGTGATCGTGGATGCGGGGAGCGCGAT TACGATTGATTTAATCCAAGAGAGCAAGCATTTAGGAGGGTGTATTTTACCCGGTTTAGCCCAATATATCCATGCGTATA AAAAAAGCGCTAAAATTTTAGAGCAACCTTTCAAAGCCTTAGATTCTTTAGAAGTTTTACCTAAAAACACTAGGGACGCC GTGAATTACGGCATGATTTTAAGCGTCATCTCTTGCATCCAGCATTTAGCCAAAAATCAAAAAATCTATCTTTGTGGGGG CGATGCGAAGTATTTGAGCGCGTTTTTACCCCATTCTGTTTGCAAGGAGCGTTTGGTTTTTGACGGGATGGAAATCGCTC TTAAAAAAGCAGGGGTATTAGAATGCAAATGA
Upstream 100 bases:
>100_bases GCGAGAGAATTTGAACAAAGAGCGAGAGAGCAACAAGAAAGAGATGAAAAAGAGCTTGAAGAAAGAAAAAAAGCTTTAGA AATGAATAAGAAGTAGGCCT
Downstream 100 bases:
>100_bases TGCACAATTTGAGTTTTTTGGGCATGTTTTTAGCCGCTTTGAGCATGTCTTTAGGGCATTGCGTGGGCATGTGTGGGGGG ATTGTGAGCGCGTTTAGTCA
Product: pantothenate kinase
Products: NA
Alternate protein names: PanK-III; Pantothenic acid kinase [H]
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETD YIGLGIDRQMACLAVNNGVIVDAGSAITIDLIQESKHLGGCILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKNTRDA VNYGMILSVISCIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGVLECK
Sequences:
>Translated_223_residues MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETD YIGLGIDRQMACLAVNNGVIVDAGSAITIDLIQESKHLGGCILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKNTRDA VNYGMILSVISCIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGVLECK >Mature_222_residues PARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETDY IGLGIDRQMACLAVNNGVIVDAGSAITIDLIQESKHLGGCILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKNTRDAV NYGMILSVISCIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGVLECK
Specific function: Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis [H]
COG id: COG1521
COG function: function code K; Putative transcriptional regulator, homolog of Bvg accessory factor
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type III pantothenate kinase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004619 [H]
Pfam domain/function: PF03309 Bvg_acc_factor [H]
EC number: =2.7.1.33 [H]
Molecular weight: Translated: 24756; Mature: 24625
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA CCCCCHHHHHHHEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCE LLNCYPNAKNIAGFFHLETDYIGLGIDRQMACLAVNNGVIVDAGSAITIDLIQESKHLGG EEEECCCCCCCEEEEEEECCEEEECCCCCEEEEEECCCEEEECCCEEEEEEECCCCCCCC CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKNTRDAVNYGMILSVISCIQHLAKNQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGVLECK EEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCC >Mature Secondary Structure PARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA CCCCHHHHHHHEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCE LLNCYPNAKNIAGFFHLETDYIGLGIDRQMACLAVNNGVIVDAGSAITIDLIQESKHLGG EEEECCCCCCCEEEEEEECCEEEECCCCCEEEEEECCCEEEECCCEEEEEEECCCCCCCC CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKNTRDAVNYGMILSVISCIQHLAKNQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGVLECK EEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA