Click here to switch to the map view.

The map label for this gene is fliF

Identifier: 188527156

GI number: 188527156

Start: 341720

End: 343423

Strand: Direct

Name: fliF

Synonym: HPSH_01815

Alternate gene names: 188527156

Gene position: 341720-343423 (Clockwise)

Preceding gene: 188527155

Following gene: 188527157

Centisome position: 21.24

GC content: 39.44

Gene sequence:

>1704_bases
TTGGATTTAAAGGTATTATTGCAACGGATTGTTGATTTTTTCATCAAGCTCAATAAAAAGCAAAAAATCGCCCTAATCGC
AGCCGGGGTTTTAATCACCGCCTTGCTTGTATTTTTATTGCTCTATCCCTTTAAAGAAAAAGACTATACGCAAGGGGGCT
ATGGGGTTTTATTTGAAAGATTGGACTCTAGCGATAACGCTTTAATCTTACAGCACCTCCAGCAAAACCAAATCCCTTAT
AAAATCTTAAAAGACGACACCATTCTTATCCCTAAAGATAAAGTGTATGAAGAAAGGATCACGCTGGCTTCTCAAGGGAT
CCCTAAAACGAGTAAAGTGGGCTTTGAAATCTTTGACACTAAAGACTTTGGAGCGACTGATTTTGATCAAAATATCAAAC
TCATTCGCGCCATTGAGGGGGAATTGTCGCGCACGATTGAAAGTTTAAACCCCATTTTGAAAGCCAATGTGCATATTGCA
ATCCCTAAAGACAGCGTGTTTGTGGCTAAAGAAGTCCCTCCTAGCGCTTCAGTGATGCTCAAACTCAAGCCTGACATGAA
GCTTTCACCCACTCAAATTTTAGGGATTAAAAATTTAATCGCTGCAGCGGTGCCTAAACTCACGACAGAAAATGTGAAAA
TCGTGAATGAAAACGGCGAATCAATAGGCGAAGGCGATATACTAGAAAACTCCAAAGAATTAGCCCTAGAGCAATTGCGT
TACAAACAAAATTTTGAAAACATTTTAGAAAATAAGATTGTCAATATCTTAGCCCCTATTGTGGGGGGTAAAAACAAGGT
AGTCGCAAGGGTCAATGCGGAGTTTGATTTCAGCCAAAGGAAAAGCACTAAAGAGACTTTTGATCCCAATAATGTCGTAA
GGAGCGAGCAAAATTTAGAAGAAAAAAAAGAAGGCGCTCCTAAAAAACAAGTCGGCGGCGTGCCTGGGGTTGTGAGCAAT
ATCGGGCCTGTGCAAGGATTGAAAGACAATAAAGAGCCAGAAAAATACGAAAAGTCTCAAAACACGACCAATTATGAAGT
GGGTAAAACCATTAGCGAGATTAAGGGCGAGTTTGGCACTTTAGTGCGTTTGAATGCGGCGGTTGTGGTGGATGGCAAGT
ATAAAATCGTGCTTAAAGACGGGGCGAACACTTTAGAATACGAGCCTTTGAGCGATGAATCGCTTAAAAAAATCAACGCT
CTAGTGAAACAAGCCATTGGCTATAATCAAAATAGAGGCGATGATGTAGCGGTGAGCAATTTTGAATTTAACCCTATGGC
ACCTATGCTTGATAACGCCACTTTGAGCGAAAAAATCATGCACAAGACTCAAAAAATCTTAGGCTCATTCACGCCTTTAA
TCAAGTATATTTTGGTGTTTATAGTGCTATTTATTTTCTATAAAAAAGTGATTGTGCCTTTCAGCGAACGCATGCTTGAA
GTGGTGCCTGATGAAGATAAGGAAGTGAAATCCATGTTTGAAGAAATGGATGAAGAAGAAGATGAATTGAACAAATTGGG
CGATTTGAGAAAAAAAGTAGAAGATCAATTAGGGCTTAATGCAACCTTTAGCGAAGAAGAAGTAAGATATGAAATTGTCT
TAGAAAAGATTAGAGGGACCCTTAAAGAGCGTCCTGATGAAATCGCAATGCTCTTTAAACTCCTAATCAAAGATGAAATT
TCTTCAGACAGCGCGAAAGGCTAA

Upstream 100 bases:

>100_bases
GCGTTAGGGGCTTGTTTTTCCATAGGGATTTATTTGAGCGTGTTTCAAAAGATCTAAGCGAACGGCTTAAAAGAATGAAA
ATTTTATCAAGGTTTTAATA

Downstream 100 bases:

>100_bases
AAAGATAAAAGGTTAAAAATGGCAACCAAGCTTACCCCCAAACAAAAGGCTCAATTAGACGAACTTTCCATGAGTGAAAA
AATCGCTATTTTACTCATTC

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPY
KILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINA
LVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEI
SSDSAKG

Sequences:

>Translated_567_residues
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPY
KILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINA
LVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEI
SSDSAKG
>Mature_567_residues
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPY
KILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINA
LVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEI
SSDSAKG

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=584, Percent_Identity=31.1643835616438, Blast_Score=245, Evalue=6e-66,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 63726; Mature: 63726

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFER
CCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LDSSDNALILQHLQQNQIPYKILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDT
HCCCCCHHHHHHHHHCCCCEEEECCCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
KDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCCCEEEEECCCCCCEEEE
KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR
EECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHCCHHHHHHHHHH
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCCCHHHHCCHHHHH
EKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGT
HHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCC
LVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSN
EEEEEEEEEECCEEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
FEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGT
HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LKERPDEIAMLFKLLIKDEISSDSAKG
HHCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFER
CCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LDSSDNALILQHLQQNQIPYKILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDT
HCCCCCHHHHHHHHHCCCCEEEECCCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
KDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCCCEEEEECCCCCCEEEE
KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR
EECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHCCHHHHHHHHHH
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCCCHHHHCCHHHHH
EKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGT
HHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCC
LVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSN
EEEEEEEEEECCEEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
FEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGT
HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LKERPDEIAMLFKLLIKDEISSDSAKG
HHCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 1551848; 8224881 [H]