Definition | Helicobacter pylori Shi470, complete genome. |
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Accession | NC_010698 |
Length | 1,608,548 |
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The map label for this gene is 188527144
Identifier: 188527144
GI number: 188527144
Start: 332831
End: 333397
Strand: Direct
Name: 188527144
Synonym: HPSH_01755
Alternate gene names: NA
Gene position: 332831-333397 (Clockwise)
Preceding gene: 188527143
Following gene: 188527145
Centisome position: 20.69
GC content: 42.68
Gene sequence:
>567_bases ATGAGCAAGAAAGATAGTTTCATCTCTAGCGTGATGGGGTTTTTTAGCGAAAAGAATGAGCGCTGGCTCTTAGCCCATAG GCACACGAGAGGGTTTGTGATCGTGGCGTGGCTTTTTCGGTTTAAAAGCATTGCGTTTTCTATTTTGATCACTCTATTAG TGATTTTGGTGGATATTTGGGTGTATAGCGATGTGCGCCAATTCTTGCTAGACACCGCCAGCTCGCCTATTTTGCTTTTA ATCGCTTTGTTAATCAAGTGGGGCGTGATTGTCATAAGCGTGCGCCAATGCTATAAGTTCAGCCAAAAAATGTTTGCACT CATCCAAAAAAAAAGGCAAATCAGAGAGAGTTTGAAAAAGCGCTCCCACCAACAAGAGGGTAAAACTCCCCCAAAAGAAA GGCTCTCTAGCGTTACTGAAGAAATTATCGCCAAAAAGCAAGAAGAAACCCAACGCCAAGAAACCCCAGAGGGCAAGCAT GATGGAGAGAGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACTAGAAGAATTGAAAGCCAAGAATAATAAGGG CAGCTAA
Upstream 100 bases:
>100_bases GAAGAAAAGAGGCTCTTGGAGCAGATCCACGCCAAAGAATCTGAAGAAAACCAAGAAAAGAGTGTTAAGCATTTCAAAGA AGTTTGGGAAAAGGGCGATA
Downstream 100 bases:
>100_bases AAGGGTGTTATATGCTCTGTCTTAGCAAATTGATCCTAGCGGCGCCGTTTTTGATAGTGGATTCAGAGGGGTTTTCGCCT TCCGTTTATACCGACAAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSKKDSFISSVMGFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIWVYSDVRQFLLDTASSPILLL IALLIKWGVIVISVRQCYKFSQKMFALIQKKRQIRESLKKRSHQQEGKTPPKERLSSVTEEIIAKKQEETQRQETPEGKH DGERLSSVTEEIISKKLEELKAKNNKGS
Sequences:
>Translated_188_residues MSKKDSFISSVMGFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIWVYSDVRQFLLDTASSPILLL IALLIKWGVIVISVRQCYKFSQKMFALIQKKRQIRESLKKRSHQQEGKTPPKERLSSVTEEIIAKKQEETQRQETPEGKH DGERLSSVTEEIISKKLEELKAKNNKGS >Mature_187_residues SKKDSFISSVMGFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIWVYSDVRQFLLDTASSPILLLI ALLIKWGVIVISVRQCYKFSQKMFALIQKKRQIRESLKKRSHQQEGKTPPKERLSSVTEEIIAKKQEETQRQETPEGKHD GERLSSVTEEIISKKLEELKAKNNKGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21834; Mature: 21703
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKDSFISSVMGFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIW CCCHHHHHHHHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYSDVRQFLLDTASSPILLLIALLIKWGVIVISVRQCYKFSQKMFALIQKKRQIRESLKK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSHQQEGKTPPKERLSSVTEEIIAKKQEETQRQETPEGKHDGERLSSVTEEIISKKLEEL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH KAKNNKGS HHCCCCCC >Mature Secondary Structure SKKDSFISSVMGFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIW CCHHHHHHHHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYSDVRQFLLDTASSPILLLIALLIKWGVIVISVRQCYKFSQKMFALIQKKRQIRESLKK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSHQQEGKTPPKERLSSVTEEIIAKKQEETQRQETPEGKHDGERLSSVTEEIISKKLEEL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH KAKNNKGS HHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA