| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is pabB [H]
Identifier: 188527099
GI number: 188527099
Start: 294053
End: 295732
Strand: Direct
Name: pabB [H]
Synonym: HPSH_01520
Alternate gene names: 188527099
Gene position: 294053-295732 (Clockwise)
Preceding gene: 188527098
Following gene: 188527100
Centisome position: 18.28
GC content: 36.55
Gene sequence:
>1680_bases ATGATTTTTGGGGATTTTAAATATCAAAAAAGGATTAAAAAACTCACCGCCACCAATCTTAATGAGCTGAAAAACGCCCT GGATTTCATCTCTCAAAATAGGGGGAATGGGTATTTTGTGGGGTATCTTTTATACGAAGCGCGCTTAGCGTTTTTAGATG AAAATTTTCAAAGTCAAACCCCTTTTTTATATTTTGAACAATTTTTAGAAAGAAAAAAATATTCTTTAGAGCCTTTAAAA GAGCATGCGTTTTACCCCAAAATCCACAGCTCTTTAGATCAAAAAACTTATTTCAAGCAGTTCAAAGCCGTTAAAGAATA TCTCAAAAACGGCGATACCTATCAAGTGAATCTCACGATGGATTTATTTTTAGACACTAAAGCCAAACTGAAGCGCGTTT TTAAGGAGGTGATACACAACCAAAACACGCCCTTTAAGGCTTTTATAGAAAATGAGTTTGGGAGCGTTTTAAGTTTTTCG CCGGAATTGTTTTTTGAATTAGAGTTTTTAGACACAGCGATTAAGATTGTTACAAAACCCATGAAAGGCACGATCGCTCG CTCAAATAACCCCTTAATAGATGAAAAAAACCGATTGTTTTTGCAAAATGATGACAAAAATAGAAGTGAAAATGTGATGA TTGTGGATTTACTGCGTAACGATTTGAGCCGCTTGGCCTTAAAAAATAGCGTGAAAGTCAATCAATTGTTTGAAATCATC AGCTTGCCTAGCGTGTATCAAATGATAAGCGAGATTGAAGCGAAATTGCCCCTAAAAACCAGCTTGTTTGAGATTTTTAA GGCGTTGTTCCCTTGCGGATCTGTGACCGGATGCCCTAAAATAAAAACCATGCAAATCATTGAAAGTTTAGAAAAACGCC CTAGGGGGGTGTATTGCGGAGCGATAGGCATGGTTGAAGAAAAAAAAGCCCTTTTTAGCGTGCCTATCCGCACTTTAGAA AAAAGAGCGCGCGAAGATTTTTTGCATTTAGGGGTAGGGAGTGGGGTAACTTATAAAAGTAAAGCGCCCAAAGAATATGA AGAGAGCTTTTTAAAATCCTTTTTTGTGATGCCCAAAATAGAATTTGAGATTGTAGAAACGATGAAAATTATCAAAAAGG ATCAAAAATTAGAGATTAACAATAAAAACGCCCATAAAGAACGCTTAATGAATAGCGCCCAATATTTCAATTTCAAACAT GATGAAAATCTTTTAGACTTTGAATTAGAAAAAGAAGGGGTTTTAAGGGTTTTACTCAATAAAAAGGGCAAGCTCATTAA AGAATACAAAGCCTTAGAGCCTTTAAAAAGCCTAGAAATTCGTTTGAGTGAAGCCCCCATTGATAAGCGCAATGATTTTT TATACCATAAGACCACCTATGCCCCTTTTTATCAAAACGCTCGAGCGCTCATTAAAAAAGGCGTTATTTTTGATGAAATC TTTTATAACCAGGATCTAGAACTCACTGAGGGCGCTAGGAGCAATCTCATTTTAGAAATCCATAACAGGCTTTTAACCCC TTATTTTAGTGCGGGCGCGTTAAACGGGACGGGTGTGATGGGATTGTTAAAAAAGAGTCTTGTTGAGCATGCCCCTTTAA AATTGCAAGACTTGCAAAGAGCGGATAAAATCTATTGCATCAATGCGCTATATGGCTTAGTGGAAGTGAAAATCAAATAA
Upstream 100 bases:
>100_bases CAGAGAAGAAGATCTAGGATTGGAGGGTTTGAGAAGGTCTAAAATGAGCTATAACCCGGTGTTTTTGATAGACAAATACG AAGCTGTTGCTAAAAATTAA
Downstream 100 bases:
>100_bases CCATAAAATAGAGCGGCTAAAACCTCATTTTTTAGAAATAGGCTACTACAAAAAAGTTAAAACTCGCCCACAATAATCAT AATGATTAAAGTTTTCATAT
Product: para-aminobenzoate synthetase (pabB)
Products: NA
Alternate protein names: ADC synthase; Para-aminobenzoate synthase component I [H]
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MIFGDFKYQKRIKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDENFQSQTPFLYFEQFLERKKYSLEPLK EHAFYPKIHSSLDQKTYFKQFKAVKEYLKNGDTYQVNLTMDLFLDTKAKLKRVFKEVIHNQNTPFKAFIENEFGSVLSFS PELFFELEFLDTAIKIVTKPMKGTIARSNNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEII SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFSVPIRTLE KRAREDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKIEFEIVETMKIIKKDQKLEINNKNAHKERLMNSAQYFNFKH DENLLDFELEKEGVLRVLLNKKGKLIKEYKALEPLKSLEIRLSEAPIDKRNDFLYHKTTYAPFYQNARALIKKGVIFDEI FYNQDLELTEGARSNLILEIHNRLLTPYFSAGALNGTGVMGLLKKSLVEHAPLKLQDLQRADKIYCINALYGLVEVKIK
Sequences:
>Translated_559_residues MIFGDFKYQKRIKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDENFQSQTPFLYFEQFLERKKYSLEPLK EHAFYPKIHSSLDQKTYFKQFKAVKEYLKNGDTYQVNLTMDLFLDTKAKLKRVFKEVIHNQNTPFKAFIENEFGSVLSFS PELFFELEFLDTAIKIVTKPMKGTIARSNNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEII SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFSVPIRTLE KRAREDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKIEFEIVETMKIIKKDQKLEINNKNAHKERLMNSAQYFNFKH DENLLDFELEKEGVLRVLLNKKGKLIKEYKALEPLKSLEIRLSEAPIDKRNDFLYHKTTYAPFYQNARALIKKGVIFDEI FYNQDLELTEGARSNLILEIHNRLLTPYFSAGALNGTGVMGLLKKSLVEHAPLKLQDLQRADKIYCINALYGLVEVKIK >Mature_559_residues MIFGDFKYQKRIKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDENFQSQTPFLYFEQFLERKKYSLEPLK EHAFYPKIHSSLDQKTYFKQFKAVKEYLKNGDTYQVNLTMDLFLDTKAKLKRVFKEVIHNQNTPFKAFIENEFGSVLSFS PELFFELEFLDTAIKIVTKPMKGTIARSNNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEII SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFSVPIRTLE KRAREDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKIEFEIVETMKIIKKDQKLEINNKNAHKERLMNSAQYFNFKH DENLLDFELEKEGVLRVLLNKKGKLIKEYKALEPLKSLEIRLSEAPIDKRNDFLYHKTTYAPFYQNARALIKKGVIFDEI FYNQDLELTEGARSNLILEIHNRLLTPYFSAGALNGTGVMGLLKKSLVEHAPLKLQDLQRADKIYCINALYGLVEVKIK
Specific function: Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine [H]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate synthase component I family [H]
Homologues:
Organism=Escherichia coli, GI1788114, Length=295, Percent_Identity=35.5932203389831, Blast_Score=191, Evalue=9e-50, Organism=Escherichia coli, GI1787518, Length=266, Percent_Identity=25.5639097744361, Blast_Score=83, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6320935, Length=265, Percent_Identity=27.1698113207547, Blast_Score=117, Evalue=4e-27, Organism=Saccharomyces cerevisiae, GI6324361, Length=289, Percent_Identity=28.0276816608997, Blast_Score=99, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR019999 - InterPro: IPR006805 - InterPro: IPR015890 - InterPro: IPR005802 [H]
Pfam domain/function: PF04715 Anth_synt_I_N; PF00425 Chorismate_bind [H]
EC number: =2.6.1.85 [H]
Molecular weight: Translated: 64907; Mature: 64907
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFGDFKYQKRIKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDENFQSQT CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCC PFLYFEQFLERKKYSLEPLKEHAFYPKIHSSLDQKTYFKQFKAVKEYLKNGDTYQVNLTM CHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE DLFLDTKAKLKRVFKEVIHNQNTPFKAFIENEFGSVLSFSPELFFELEFLDTAIKIVTKP EEEECCHHHHHHHHHHHHCCCCCCEEEHHHHHCCHHHCCCHHHEEEHHHHHHHHHHHHCC MKGTIARSNNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEII CCCCEECCCCCCCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHH SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCG CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE AIGMVEEKKALFSVPIRTLEKRAREDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH EFEIVETMKIIKKDQKLEINNKNAHKERLMNSAQYFNFKHDENLLDFELEKEGVLRVLLN HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHC KKGKLIKEYKALEPLKSLEIRLSEAPIDKRNDFLYHKTTYAPFYQNARALIKKGVIFDEI CCCHHHHHHHHHCCHHHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH FYNQDLELTEGARSNLILEIHNRLLTPYFSAGALNGTGVMGLLKKSLVEHAPLKLQDLQR HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH ADKIYCINALYGLVEVKIK CCCEEEHHHHHCEEEEEEC >Mature Secondary Structure MIFGDFKYQKRIKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDENFQSQT CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCC PFLYFEQFLERKKYSLEPLKEHAFYPKIHSSLDQKTYFKQFKAVKEYLKNGDTYQVNLTM CHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE DLFLDTKAKLKRVFKEVIHNQNTPFKAFIENEFGSVLSFSPELFFELEFLDTAIKIVTKP EEEECCHHHHHHHHHHHHCCCCCCEEEHHHHHCCHHHCCCHHHEEEHHHHHHHHHHHHCC MKGTIARSNNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEII CCCCEECCCCCCCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHH SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCG CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE AIGMVEEKKALFSVPIRTLEKRAREDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH EFEIVETMKIIKKDQKLEINNKNAHKERLMNSAQYFNFKHDENLLDFELEKEGVLRVLLN HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHC KKGKLIKEYKALEPLKSLEIRLSEAPIDKRNDFLYHKTTYAPFYQNARALIKKGVIFDEI CCCHHHHHHHHHCCHHHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH FYNQDLELTEGARSNLILEIHNRLLTPYFSAGALNGTGVMGLLKKSLVEHAPLKLQDLQR HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH ADKIYCINALYGLVEVKIK CCCEEEHHHHHCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6330050; 9097040; 9278503; 7896119; 2251281; 7592344 [H]