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The map label for this gene is 188527088

Identifier: 188527088

GI number: 188527088

Start: 274916

End: 276352

Strand: Direct

Name: 188527088

Synonym: HPSH_01465

Alternate gene names: NA

Gene position: 274916-276352 (Clockwise)

Preceding gene: 188527086

Following gene: 188527089

Centisome position: 17.09

GC content: 37.37

Gene sequence:

>1437_bases
TTGAAAAAAATCGCCCTTATTTTAGATGGCATTGTAGCAAAAAATTTTTTAGACTTGGTGCTAAGGCATTATTCTAATCA
TAATTTTTATATAGTGGTTGTCAAAAATGAGAGCCTTATCCCTAAAAACTACCCGAGCACTTTCGCTTTTCATTGTTTTG
ATGCGACTTCTAGTTTCAGGCTTTTGCAAGTGTTAAACGATGAGGTGAGCGATGCGTTTTTAATCATACAAGATTTTAAA
GAACAGCGCATCATTCACAAAATCATTCAAACCCATTTCAAACGCATGCGCGTGGTTTTGGGCGTGAAAAGAGATGGTGA
AAAAACTTTAGAAAATAATGAAGAAAATAAAGATGAAAAGCTTATTTTAATTGATGAATTTGAAGTTTTAGCCAATAAAT
TCATTTCTCGTTTGCCTAATATCCCTAGCACTCCTAGAGAGTTTGGGTTAGGTAAGGGCGAGATCATGGAGATTGATGTG
CCTTTTGGGAGTATTTTTGCTTACAGGCATATTGGCTCTATCAGACAAAAAGAATACAGGATTGTAGGGCTTTATCGCAA
CGATGTTTTGTTGCTCTCCACTAAATCTTTGGTTATCCAGCCGCGAGATATTCTTTTAGTGGCAGGCAATCCAGAAATTT
TAAATGCAGTGTATCTCCAGGTCAAAAGCAATGTGGGGCAGTTCCCAGCCCCCTTTGGTAAGAGCATTTATTTATACATT
GATATGCGCTTACAGAGCAGAAAAGCGATGATGCGCGATGTGTATCAAGCCTTGTTTTTGCACAAACATTTAAAGAGCTA
CAAGCTCTACATCCAGGTTTTACACCCCACTAGCCCTAAGTTTTATCATAAATTTTTATCGCTAGAAACCGAAAGCATTG
AAGTGAATTTTGATTTTTACGGGAAAAGTTTTATCCAAAAACTCCATGAAGACCACCAGAAAAAAATGGGTTTGATTGTG
GTAGGCAGAGAGCTTTTTTTATCTAAAAAACACCGAAAAGCCTTGTATAAAACAGCCACCCCGGTTTATAAAACCAACGC
TTCCGGCTTGTCTAAAACCTCTCAAAGCGTGGTGGTATTGAATGAGAGCTTGGATATTAATGAGGACATGTCTTCAGTGA
TCTTTGATGTGTCTATGCAAATGGATTTGGGCTTGTTGCTCTATGATTTTGACCCTAACAGGCGCTATAAAAACGAGATT
GTCAATCATTATGAAAATTTAGCCAACGCGCTCAACCGCAAGATTGAGATTTTTCAAACTGATATTAGAAATCCTATCAT
GTATCTCAATTCTTTAAGAAATCCCATTTTGCATTTCATGCCTTTTGAAGAGTGTATCACGCACACGCGCTTTTGGTGGT
TTTTATCCACTAAAGTGGAAAAATTAGCGTTTTTAAACGATGATAACCCTCAAATTTTTATCCCCATAGCGGAGTGA

Upstream 100 bases:

>100_bases
CCAGCTCGCGCGTTATTGTCCGTCGCTTGGAGTTGAAAATCCATCGTTTAAGCCTTAATCTTGGATATAATGGCGTAATC
ATTTTTTAGGAAGTTTGGAA

Downstream 100 bases:

>100_bases
AAGAATGCAAGAAATTTTAATCCCTTTAAAAGAAAAAAGCTATAAAGTGTTTTTGGGGGAACTGCCTGAAATTGAATTGA
AACAAAAAGCGCTCATCATT

Product: hypothetical protein

Products: NA

Alternate protein names: TrkA-C; TrkA-C Domain-Containing Protein; TrkA Domain Protein; Trka-C Domain Protein; TrkA-C Domain Protein

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFRLLQVLNDEVSDAFLIIQDFK
EQRIIHKIIQTHFKRMRVVLGVKRDGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDV
PFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYLYI
DMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGLIV
VGRELFLSKKHRKALYKTATPVYKTNASGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKNEI
VNHYENLANALNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPIAE

Sequences:

>Translated_478_residues
MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFRLLQVLNDEVSDAFLIIQDFK
EQRIIHKIIQTHFKRMRVVLGVKRDGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDV
PFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYLYI
DMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGLIV
VGRELFLSKKHRKALYKTATPVYKTNASGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKNEI
VNHYENLANALNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPIAE
>Mature_478_residues
MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFRLLQVLNDEVSDAFLIIQDFK
EQRIIHKIIQTHFKRMRVVLGVKRDGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDV
PFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYLYI
DMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGLIV
VGRELFLSKKHRKALYKTATPVYKTNASGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKNEI
VNHYENLANALNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPIAE

Specific function: Unknown

COG id: COG3400

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55813; Mature: 55813

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFR
CCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCHHH
LLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMRVVLGVKRDGEKTLENNEENKDEK
HHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHCCCCCCCCCE
LILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYR
EEEEEHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEE
IVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYLYI
EEEEEECCEEEEEECCEEECCCEEEEECCCCHHHHHHHEEECCCCCCCCCCCCCEEEEEE
DMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFY
EEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCEEEEEEEEEECC
GKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNASGLSKTSQSVVVL
CHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEE
NESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKNEIVNHYENLANALNRKIEIFQT
ECCCCCCCCHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHH
DIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPIAE
HHCCHHHHHHHHCCHHHHCCCHHHHHHHCEEEEEEHHHHHHHEEECCCCCEEEEEECC
>Mature Secondary Structure
MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFR
CCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCHHH
LLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMRVVLGVKRDGEKTLENNEENKDEK
HHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHCCCCCCCCCE
LILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYR
EEEEEHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEE
IVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYLYI
EEEEEECCEEEEEECCEEECCCEEEEECCCCHHHHHHHEEECCCCCCCCCCCCCEEEEEE
DMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFY
EEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCEEEEEEEEEECC
GKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNASGLSKTSQSVVVL
CHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEE
NESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKNEIVNHYENLANALNRKIEIFQT
ECCCCCCCCHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHH
DIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPIAE
HHCCHHHHHHHHCCHHHHCCCHHHHHHHCEEEEEEHHHHHHHEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA