| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527080
Identifier: 188527080
GI number: 188527080
Start: 267651
End: 268049
Strand: Direct
Name: 188527080
Synonym: HPSH_01425
Alternate gene names: NA
Gene position: 267651-268049 (Clockwise)
Preceding gene: 188527079
Following gene: 188527081
Centisome position: 16.64
GC content: 36.59
Gene sequence:
>399_bases ATGCAAGATTTTGATTTTAGTTTTAATTATAAGGCATGCGAGGGTTGTGGGGCAAAGTGTTGCGTGGGGGAAAGCGGGTA TATTTTTTTAAATACCCAAGAAATGCAAAAAATTAGCGCTTTTTTAAAATTAGAATTAGAAGAATTCAGTCAAAAATATG TTAAAAAGGTAGGGTATAAGTTCTCTTTACTAGAAAAAGACGCTAAAGAGTTGGGTTTGGCGTGCGTGTTTTTGGATTTA GAAACCAAAAAATGCCAGATTTATAGCGTGCGCCCCAAGCAATGCCAAACTTTTCCTTTTTGGGAGAGCGTGAAAACTTT CTCTAAAGAGCAAAAGGAAGCTTTTTGTCAAAGCTGTCCGGGCATTACACAAAAAACCAAAGAAACTAAAGTGCGCTAA
Upstream 100 bases:
>100_bases CGCTCAAAGCCAATTGCCTTTAAAAATCTCTAAAGATGATGAAGGGTTGTTGGTGCAATTTAGCGTGAGTATTGATCTCC AATAGGATAGGGGTAGTTTA
Downstream 100 bases:
>100_bases AATTCACTTCAGTGATACAAAAAAGGAAATAAAATAATGGGTATTCAAATAAAGAAAAGATTTTTAGCAAGTTTATTGCT TTTTAGCCTGTTTTGCCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDL ETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCPGITQKTKETKVR
Sequences:
>Translated_132_residues MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDL ETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCPGITQKTKETKVR >Mature_132_residues MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDL ETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCPGITQKTKETKVR
Specific function: Unknown
COG id: COG0727
COG function: function code R; Predicted Fe-S-cluster oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ0661 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005358 [H]
Pfam domain/function: PF03692 UPF0153 [H]
EC number: NA
Molecular weight: Translated: 15260; Mature: 15260
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 6.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYK CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCP HHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC GITQKTKETKVR CCCCCCCCCCCC >Mature Secondary Structure MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYK CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCP HHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC GITQKTKETKVR CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]