Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527080

Identifier: 188527080

GI number: 188527080

Start: 267651

End: 268049

Strand: Direct

Name: 188527080

Synonym: HPSH_01425

Alternate gene names: NA

Gene position: 267651-268049 (Clockwise)

Preceding gene: 188527079

Following gene: 188527081

Centisome position: 16.64

GC content: 36.59

Gene sequence:

>399_bases
ATGCAAGATTTTGATTTTAGTTTTAATTATAAGGCATGCGAGGGTTGTGGGGCAAAGTGTTGCGTGGGGGAAAGCGGGTA
TATTTTTTTAAATACCCAAGAAATGCAAAAAATTAGCGCTTTTTTAAAATTAGAATTAGAAGAATTCAGTCAAAAATATG
TTAAAAAGGTAGGGTATAAGTTCTCTTTACTAGAAAAAGACGCTAAAGAGTTGGGTTTGGCGTGCGTGTTTTTGGATTTA
GAAACCAAAAAATGCCAGATTTATAGCGTGCGCCCCAAGCAATGCCAAACTTTTCCTTTTTGGGAGAGCGTGAAAACTTT
CTCTAAAGAGCAAAAGGAAGCTTTTTGTCAAAGCTGTCCGGGCATTACACAAAAAACCAAAGAAACTAAAGTGCGCTAA

Upstream 100 bases:

>100_bases
CGCTCAAAGCCAATTGCCTTTAAAAATCTCTAAAGATGATGAAGGGTTGTTGGTGCAATTTAGCGTGAGTATTGATCTCC
AATAGGATAGGGGTAGTTTA

Downstream 100 bases:

>100_bases
AATTCACTTCAGTGATACAAAAAAGGAAATAAAATAATGGGTATTCAAATAAAGAAAAGATTTTTAGCAAGTTTATTGCT
TTTTAGCCTGTTTTGCCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDL
ETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCPGITQKTKETKVR

Sequences:

>Translated_132_residues
MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDL
ETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCPGITQKTKETKVR
>Mature_132_residues
MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDL
ETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCPGITQKTKETKVR

Specific function: Unknown

COG id: COG0727

COG function: function code R; Predicted Fe-S-cluster oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0661 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005358 [H]

Pfam domain/function: PF03692 UPF0153 [H]

EC number: NA

Molecular weight: Translated: 15260; Mature: 15260

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
6.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYK
CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCP
HHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GITQKTKETKVR
CCCCCCCCCCCC
>Mature Secondary Structure
MQDFDFSFNYKACEGCGAKCCVGESGYIFLNTQEMQKISAFLKLELEEFSQKYVKKVGYK
CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWESVKTFSKEQKEAFCQSCP
HHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GITQKTKETKVR
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]