| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527064
Identifier: 188527064
GI number: 188527064
Start: 251083
End: 251742
Strand: Direct
Name: 188527064
Synonym: HPSH_01335
Alternate gene names: NA
Gene position: 251083-251742 (Clockwise)
Preceding gene: 188527063
Following gene: 188527065
Centisome position: 15.61
GC content: 39.85
Gene sequence:
>660_bases ATGCGTAAAATCTTGTTAATGGGCTTGATTTTGCAAGCGCTCTTTGGCGAAGAAGTTGCACAAGAATTGTTGCAATGCTC TGCGATTTTTGAATCCAAAAAAGCCGAATTGAAAGACGATTTGCGCCGATTGAGCGAAAAAGAGCAGTCTTTAAGGATCT TGCAAACCGAAAACGCCCGCCTTTTAGATGAAAAAACCGATCTGTTAAACAAAAAAGAAAAAGAAGTGGAAGAAAAACTG AAAAATCTAGCCGCTAAAGAAGAAGCCTTTAAAGCCTTACAAACGGAAGAAAAAAAGCGCCTTAAAAATTTGATAGAAGA AAACGAAGGCATTTTAAGAGGAATCAAGCAGGCTAAAGATAGCAAGATTGGCGAGACTTACTCTAAAATGAAAGATTCTA AGTCCGCCTTGATTTTAGAAAATCTACCCACTCAAAACGCCTTAGAAATTTTAATGGCGCTAAAACCCCAAGAATTAGGT AAAATTTTAGCCAAAATGGATCCTAAAAAAGCGGCGGCTTTGACGGAGTTGTGGCAAAAACCCCCACGAGAAAATAAAGA AATCCCAAAAACCATACCACCCATGCCCCCTATAGCTCCCACGCCTTCAAAAGAGCCGATGATAAAAGATCCTAACACCA AAGAGCCTGCAGGGGTATGA
Upstream 100 bases:
>100_bases GAAAATGAAAAGCGAAAAGAAAAGGAAATTTTGGAAAAAAAAGAGCAGGCTCTTTTAGACGAAAACGCCATGATTTTACA CTGGCAAAAAGAGGGCTTGC
Downstream 100 bases:
>100_bases TGTTCATTGTGGCGGTTTTAATGTTGGCGTTTTTAATCTTTGTCCATGAATTAGGGCATTTCACTATCGCTAGGATTTGT GGGGTCAAGGTAGAAGTCTT
Product: conserved hypothetical secreted protein
Products: NA
Alternate protein names: PDP Protein; MgtE Intracellular N Domain; Mgte Intracellular Region; ATPase AAA Family Protein
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MRKILLMGLILQALFGEEVAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNKKEKEVEEKL KNLAAKEEAFKALQTEEKKRLKNLIEENEGILRGIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELG KILAKMDPKKAAALTELWQKPPRENKEIPKTIPPMPPIAPTPSKEPMIKDPNTKEPAGV
Sequences:
>Translated_219_residues MRKILLMGLILQALFGEEVAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNKKEKEVEEKL KNLAAKEEAFKALQTEEKKRLKNLIEENEGILRGIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELG KILAKMDPKKAAALTELWQKPPRENKEIPKTIPPMPPIAPTPSKEPMIKDPNTKEPAGV >Mature_219_residues MRKILLMGLILQALFGEEVAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNKKEKEVEEKL KNLAAKEEAFKALQTEEKKRLKNLIEENEGILRGIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELG KILAKMDPKKAAALTELWQKPPRENKEIPKTIPPMPPIAPTPSKEPMIKDPNTKEPAGV
Specific function: Unknown
COG id: COG3334
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24799; Mature: 24799
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKILLMGLILQALFGEEVAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENAR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH LLDEKTDLLNKKEKEVEEKLKNLAAKEEAFKALQTEEKKRLKNLIEENEGILRGIKQAKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH SKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELGKILAKMDPKKAAALTELWQK HHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHC PPRENKEIPKTIPPMPPIAPTPSKEPMIKDPNTKEPAGV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRKILLMGLILQALFGEEVAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENAR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH LLDEKTDLLNKKEKEVEEKLKNLAAKEEAFKALQTEEKKRLKNLIEENEGILRGIKQAKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH SKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELGKILAKMDPKKAAALTELWQK HHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHC PPRENKEIPKTIPPMPPIAPTPSKEPMIKDPNTKEPAGV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA