| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527063
Identifier: 188527063
GI number: 188527063
Start: 250662
End: 251090
Strand: Direct
Name: 188527063
Synonym: HPSH_01330
Alternate gene names: NA
Gene position: 250662-251090 (Clockwise)
Preceding gene: 188527062
Following gene: 188527064
Centisome position: 15.58
GC content: 34.27
Gene sequence:
>429_bases ATGAAAAAATTCGCTTCTGTATTGGTGCAATTAAAAACCCTTGCGTTAGAAAAAATAGAACAAAAGCTTGAAAGCAAGCG TTTAGAATGGCAGCAAAATGAGCGAGAAATTTTGGACAAACAAGCCCAACTGAGCGCGTTTAAAAACCCTGAATTGGGGG GAATGAGCCTTTTTTTACAAACCCAGCAATTAAAAAGCGCTATAAGAATGGAGATAGAATATTACCAACAAGAAAGCGAG AATTTAATTAAGGATTTAAAAATTTTAGAAAAAGAGTATCTTTTGGCTAACCAGGAATTAGAAAAAGCTAAAATCATTTT AGAAAATGAAAAGCGAAAAGAAAAGGAAATTTTGGAAAAAAAAGAGCAGGCTCTTTTAGACGAAAACGCCATGATTTTAC ACTGGCAAAAAGAGGGCTTGCATGCGTAA
Upstream 100 bases:
>100_bases AGCCAAACGCTAGAGAGTATATCCGCTTTATTGAAAAAGAAGTGGGGGTAAAAATCCGCCTTATTTCTACAAGCCCTGAA AGAGAAGACACGATTTTTCT
Downstream 100 bases:
>100_bases AATCTTGTTAATGGGCTTGATTTTGCAAGCGCTCTTTGGCGAAGAAGTTGCACAAGAATTGTTGCAATGCTCTGCGATTT TTGAATCCAAAAAAGCCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MKKFASVLVQLKTLALEKIEQKLESKRLEWQQNEREILDKQAQLSAFKNPELGGMSLFLQTQQLKSAIRMEIEYYQQESE NLIKDLKILEKEYLLANQELEKAKIILENEKRKEKEILEKKEQALLDENAMILHWQKEGLHA
Sequences:
>Translated_142_residues MKKFASVLVQLKTLALEKIEQKLESKRLEWQQNEREILDKQAQLSAFKNPELGGMSLFLQTQQLKSAIRMEIEYYQQESE NLIKDLKILEKEYLLANQELEKAKIILENEKRKEKEILEKKEQALLDENAMILHWQKEGLHA >Mature_142_residues MKKFASVLVQLKTLALEKIEQKLESKRLEWQQNEREILDKQAQLSAFKNPELGGMSLFLQTQQLKSAIRMEIEYYQQESE NLIKDLKILEKEYLLANQELEKAKIILENEKRKEKEILEKKEQALLDENAMILHWQKEGLHA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16852; Mature: 16852
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFASVLVQLKTLALEKIEQKLESKRLEWQQNEREILDKQAQLSAFKNPELGGMSLFLQ CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH TQQLKSAIRMEIEYYQQESENLIKDLKILEKEYLLANQELEKAKIILENEKRKEKEILEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH KEQALLDENAMILHWQKEGLHA HHHHHHCCCCEEEEECCCCCCC >Mature Secondary Structure MKKFASVLVQLKTLALEKIEQKLESKRLEWQQNEREILDKQAQLSAFKNPELGGMSLFLQ CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH TQQLKSAIRMEIEYYQQESENLIKDLKILEKEYLLANQELEKAKIILENEKRKEKEILEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH KEQALLDENAMILHWQKEGLHA HHHHHHCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA