| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is msrAB [H]
Identifier: 188527029
GI number: 188527029
Start: 217455
End: 218492
Strand: Direct
Name: msrAB [H]
Synonym: HPSH_01160
Alternate gene names: 188527029
Gene position: 217455-218492 (Clockwise)
Preceding gene: 188527028
Following gene: 188527030
Centisome position: 13.52
GC content: 40.66
Gene sequence:
>1038_bases ATGCAAGCGAATGAAAGCATGGGATCTCAACACCAAAAAACCGATGAAAGAGTGATTTACTTGGCTGGGGGGTGCTTTTG GGGGCTAGAGGCGTATATGGAGAGGATTTATGGCGTCATAGACGCAAGCTCTGGTTACGCTAACGGCAAGACTTCAAGCA CGAATTATGAAAAGTTGCATGAAAGCGATCATGCTGAAAGCGTGAAAGTGGTTTATGATCCTAAAAAAATCAGTTTGGAC AAGTTGTTGCGTTATTATTTTAAGGTGATTGATCCGGTGAGCGTGAATAAGCAGGGTAATGATGTGGGCAGGCAGTATCG CACGGGGATTTATTATGTCAATAGCGCGGATAAAGAAGTGATAGATCACGCCTTAAAAGCGTTACAAAAAGAAGTGAAAG GCAAAATCGCTATTGAGGTAGAGCCTTTAAAAAATTATGTGAGGGCTGAAGAATATCACCAAGATTATTTGAAAAAACAC CCTGGTGGCTATTGCCATATTGATTTGAAAAAGGCGGATGAAGTGATTGTAGATAGCGATAAATACACCAAACCAAGCGA TGAAGTTTTAAAGAAAAAACTCACCAAACTCCAGTATGAAGTGACGCAAAACAAACACACTGAGAAACCCTTTGAAAATG AGTATTACAATAAAGAAGAAGAGGGTATTTATGTGGATATTACCACAGGCGAGCCGTTATTTTCTTCAGCGGATAAATAC GACTCCGGTTGCGGGTGGCCAAGCTTTTCTAAGCCTATCAATAAAGATGTGGTGAAATACGAAGACGATGAGAGCCTTAA TAGGAAACGCATTGAAGTGTTGAGCCGTATTGGTAAGGCGCATTTAGGGCATGTGTTTAACGATGGGCCTAAAGAATTAG GGGGCTTAAGGTATTGCATTAATAGCGCGGCTTTAAGGTTTATCCCCTTAAAAGACATGGAAAAAGAGGGTTATGGCGAG TTCATCCCCTATATCAAAAAGGGTGAATTGAAAAAATACATCCAGGATAAAAAAAACGCATTAAGGGGTAATGACTAG
Upstream 100 bases:
>100_bases TTTAGCTTATAATTGCTATCATTATTGAAATAAAGGTTATTTAATGAAAGTATTATCTTACTTGAAACATTTTTATCTTT TTCTACTAATAGGAGCGTTT
Downstream 100 bases:
>100_bases CACCCCCTAATGGGGGTAAAATGGGGGGTTAAAGCGTTATCTTAAAAACGCTAAAAACCGCTCGCTGATTTATTTTCAAC TATTCTTATTCAAAAAACAA
Product: bifunctional methionine sulfoxide reductase A/B protein
Products: NA
Alternate protein names: Peptide methionine sulfoxide reductase msrA; Protein-methionine-S-oxide reductase; Peptide-methionine (S)-S-oxide reductase; Peptide Met(O) reductase; Peptide methionine sulfoxide reductase msrB; Peptide-methionine (R)-S-oxide reductase [H]
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MQANESMGSQHQKTDERVIYLAGGCFWGLEAYMERIYGVIDASSGYANGKTSSTNYEKLHESDHAESVKVVYDPKKISLD KLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKKH PGGYCHIDLKKADEVIVDSDKYTKPSDEVLKKKLTKLQYEVTQNKHTEKPFENEYYNKEEEGIYVDITTGEPLFSSADKY DSGCGWPSFSKPINKDVVKYEDDESLNRKRIEVLSRIGKAHLGHVFNDGPKELGGLRYCINSAALRFIPLKDMEKEGYGE FIPYIKKGELKKYIQDKKNALRGND
Sequences:
>Translated_345_residues MQANESMGSQHQKTDERVIYLAGGCFWGLEAYMERIYGVIDASSGYANGKTSSTNYEKLHESDHAESVKVVYDPKKISLD KLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKKH PGGYCHIDLKKADEVIVDSDKYTKPSDEVLKKKLTKLQYEVTQNKHTEKPFENEYYNKEEEGIYVDITTGEPLFSSADKY DSGCGWPSFSKPINKDVVKYEDDESLNRKRIEVLSRIGKAHLGHVFNDGPKELGGLRYCINSAALRFIPLKDMEKEGYGE FIPYIKKGELKKYIQDKKNALRGND >Mature_345_residues MQANESMGSQHQKTDERVIYLAGGCFWGLEAYMERIYGVIDASSGYANGKTSSTNYEKLHESDHAESVKVVYDPKKISLD KLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKKH PGGYCHIDLKKADEVIVDSDKYTKPSDEVLKKKLTKLQYEVTQNKHTEKPFENEYYNKEEEGIYVDITTGEPLFSSADKY DSGCGWPSFSKPINKDVVKYEDDESLNRKRIEVLSRIGKAHLGHVFNDGPKELGGLRYCINSAALRFIPLKDMEKEGYGE FIPYIKKGELKKYIQDKKNALRGND
Specific function: Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine [H]
COG id: COG0225
COG function: function code O; Peptide methionine sulfoxide reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the msrB Met sulfoxide reductase family [H]
Homologues:
Organism=Homo sapiens, GI301336164, Length=124, Percent_Identity=50.8064516129032, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI301336162, Length=124, Percent_Identity=50.8064516129032, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI73089054, Length=124, Percent_Identity=50.8064516129032, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI37620216, Length=124, Percent_Identity=50.8064516129032, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI117606353, Length=128, Percent_Identity=46.09375, Blast_Score=105, Evalue=9e-23, Organism=Homo sapiens, GI6912516, Length=150, Percent_Identity=36, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI208609995, Length=150, Percent_Identity=36, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI208609993, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=3e-15, Organism=Escherichia coli, GI1788077, Length=125, Percent_Identity=48.8, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1790665, Length=151, Percent_Identity=33.7748344370861, Blast_Score=96, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17553450, Length=111, Percent_Identity=44.1441441441441, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI115532676, Length=111, Percent_Identity=44.1441441441441, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17533973, Length=137, Percent_Identity=35.036496350365, Blast_Score=82, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6320881, Length=160, Percent_Identity=40.625, Blast_Score=117, Evalue=2e-27, Organism=Saccharomyces cerevisiae, GI6319816, Length=135, Percent_Identity=37.037037037037, Blast_Score=90, Evalue=6e-19, Organism=Drosophila melanogaster, GI24645799, Length=122, Percent_Identity=48.3606557377049, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI45553335, Length=122, Percent_Identity=48.3606557377049, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI21356369, Length=122, Percent_Identity=48.3606557377049, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI24645801, Length=133, Percent_Identity=44.3609022556391, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI24645804, Length=133, Percent_Identity=44.3609022556391, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI221378664, Length=122, Percent_Identity=45.9016393442623, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI221378662, Length=129, Percent_Identity=44.1860465116279, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI24664627, Length=140, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI45553131, Length=145, Percent_Identity=32.4137931034483, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002579 - InterPro: IPR011057 - InterPro: IPR002569 [H]
Pfam domain/function: PF01625 PMSR; PF01641 SelR [H]
EC number: =1.8.4.11; =1.8.4.12 [H]
Molecular weight: Translated: 39561; Mature: 39561
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: PS00191 CYTOCHROME_B5_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQANESMGSQHQKTDERVIYLAGGCFWGLEAYMERIYGVIDASSGYANGKTSSTNYEKLH CCCCCCCCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH ESDHAESVKVVYDPKKISLDKLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEV CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEECCCCHHH IDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKKHPGGYCHIDLKKADEVIVDSD HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCC KYTKPSDEVLKKKLTKLQYEVTQNKHTEKPFENEYYNKEEEGIYVDITTGEPLFSSADKY CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCC DSGCGWPSFSKPINKDVVKYEDDESLNRKRIEVLSRIGKAHLGHVFNDGPKELGGLRYCI CCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHH NSAALRFIPLKDMEKEGYGEFIPYIKKGELKKYIQDKKNALRGND HHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQANESMGSQHQKTDERVIYLAGGCFWGLEAYMERIYGVIDASSGYANGKTSSTNYEKLH CCCCCCCCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH ESDHAESVKVVYDPKKISLDKLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEV CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEECCCCHHH IDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKKHPGGYCHIDLKKADEVIVDSD HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCC KYTKPSDEVLKKKLTKLQYEVTQNKHTEKPFENEYYNKEEEGIYVDITTGEPLFSSADKY CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCC DSGCGWPSFSKPINKDVVKYEDDESLNRKRIEVLSRIGKAHLGHVFNDGPKELGGLRYCI CCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHH NSAALRFIPLKDMEKEGYGEFIPYIKKGELKKYIQDKKNALRGND HHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]