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The map label for this gene is araD [H]

Identifier: 187935534

GI number: 187935534

Start: 3423373

End: 3424062

Strand: Reverse

Name: araD [H]

Synonym: CLL_A3262

Alternate gene names: 187935534

Gene position: 3424062-3423373 (Counterclockwise)

Preceding gene: 187932766

Following gene: 187935162

Centisome position: 90.1

GC content: 32.03

Gene sequence:

>690_bases
ATGTTAGAAAATTTAAAAAAAGAAGTTTATGAAGCAAATATGCTTTTACCTAAATATAATTTAGTGACTTTTACATGGGG
AAATGTTTCAGCAATAGATAGAGAAAAGGGTCTTATAGTAATCAAACCATCAGGTGTCGATTATGACAAAATGTCACCAG
AGGATATGGTAGTTGTAGATTTAGATGGGAATGTTGTAGAAGGAAAGTATAAGCCGTCATCAGATACACAAACTCATATT
AAGCTATATCACGACTTTTTAGAAATTGGAGGAATTGTTCATACTCATTCAAGATGGGCAACAATATTCGCACAAGCAGG
AAGATGTATTAATCCATATGGAACAACTCAAGCTGATTATTTTTATGATGAAATTCCTTGTACTCGAGATATGACAGCAG
AAGAAATAAAAGCAAATTATGAATATAATACAGGTGGAGTAATTGTAGATACATTTAAACATATAAATCCTAATAATGTA
CCAGCTGTGTTAGTGAAAAATCATGGGCCTTTTACTTGGGGAAAAGATGCAATGGAAGCAGTTCATAATGCTGTAGTGTT
AGAAGAAGTTGCTATGATGGCTTGGAATACTGAGGTTTTATCAAATAAAAATATTAATTCAATGCCAAAGGATCTTATGG
ATAAACACTTTATGAGAAAGCATGGACCTAATGCATATTATGGTCAATAA

Upstream 100 bases:

>100_bases
AGTAATTTATTTAATTATTTAATTGATTAAGTAGAAATGAATTATTTCAATGTAGTGACTGTCATCACATATTGAAAATA
CATTGTTAGGAGGATGAAAT

Downstream 100 bases:

>100_bases
AAAATGAGTTTATTACAACTTTAATGTGTTTTTACTATATATTTAATGATTATTGTAGGTAATAAAAAAGTAATGGTTAT
TATAACTCAATAGAAAATAA

Product: L-ribulose-5-phosphate 4-epimerase

Products: D-xylulose 5-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLENLKKEVYEANMLLPKYNLVTFTWGNVSAIDREKGLIVIKPSGVDYDKMSPEDMVVVDLDGNVVEGKYKPSSDTQTHI
KLYHDFLEIGGIVHTHSRWATIFAQAGRCINPYGTTQADYFYDEIPCTRDMTAEEIKANYEYNTGGVIVDTFKHINPNNV
PAVLVKNHGPFTWGKDAMEAVHNAVVLEEVAMMAWNTEVLSNKNINSMPKDLMDKHFMRKHGPNAYYGQ

Sequences:

>Translated_229_residues
MLENLKKEVYEANMLLPKYNLVTFTWGNVSAIDREKGLIVIKPSGVDYDKMSPEDMVVVDLDGNVVEGKYKPSSDTQTHI
KLYHDFLEIGGIVHTHSRWATIFAQAGRCINPYGTTQADYFYDEIPCTRDMTAEEIKANYEYNTGGVIVDTFKHINPNNV
PAVLVKNHGPFTWGKDAMEAVHNAVVLEEVAMMAWNTEVLSNKNINSMPKDLMDKHFMRKHGPNAYYGQ
>Mature_229_residues
MLENLKKEVYEANMLLPKYNLVTFTWGNVSAIDREKGLIVIKPSGVDYDKMSPEDMVVVDLDGNVVEGKYKPSSDTQTHI
KLYHDFLEIGGIVHTHSRWATIFAQAGRCINPYGTTQADYFYDEIPCTRDMTAEEIKANYEYNTGGVIVDTFKHINPNNV
PAVLVKNHGPFTWGKDAMEAVHNAVVLEEVAMMAWNTEVLSNKNINSMPKDLMDKHFMRKHGPNAYYGQ

Specific function: Probable pentulose-5-phosphate-4-epimerase [H]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=228, Percent_Identity=60.9649122807018, Blast_Score=298, Evalue=2e-82,
Organism=Escherichia coli, GI1790008, Length=232, Percent_Identity=59.9137931034483, Blast_Score=283, Evalue=9e-78,
Organism=Escherichia coli, GI1786247, Length=232, Percent_Identity=61.2068965517241, Blast_Score=282, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: 5.1.3.4

Molecular weight: Translated: 25951; Mature: 25951

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLENLKKEVYEANMLLPKYNLVTFTWGNVSAIDREKGLIVIKPSGVDYDKMSPEDMVVVD
CCCHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCEEEEE
LDGNVVEGKYKPSSDTQTHIKLYHDFLEIGGIVHTHSRWATIFAQAGRCINPYGTTQADY
CCCCEEECEECCCCCCHHHHHHHHHHHHHCCEEEECHHHHHHHHHCCCEECCCCCCCCCE
FYDEIPCTRDMTAEEIKANYEYNTGGVIVDTFKHINPNNVPAVLVKNHGPFTWGKDAMEA
ECCCCCCCCCCCHHHHHCCCEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHH
VHNAVVLEEVAMMAWNTEVLSNKNINSMPKDLMDKHFMRKHGPNAYYGQ
HHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLENLKKEVYEANMLLPKYNLVTFTWGNVSAIDREKGLIVIKPSGVDYDKMSPEDMVVVD
CCCHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCEEEEE
LDGNVVEGKYKPSSDTQTHIKLYHDFLEIGGIVHTHSRWATIFAQAGRCINPYGTTQADY
CCCCEEECEECCCCCCHHHHHHHHHHHHHCCEEEECHHHHHHHHHCCCEECCCCCCCCCE
FYDEIPCTRDMTAEEIKANYEYNTGGVIVDTFKHINPNNVPAVLVKNHGPFTWGKDAMEA
ECCCCCCCCCCCHHHHHCCCEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHH
VHNAVVLEEVAMMAWNTEVLSNKNINSMPKDLMDKHFMRKHGPNAYYGQ
HHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-ribulose 5-phosphate

Specific reaction: L-ribulose 5-phosphate = D-xylulose 5-phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]