| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is yqiI [H]
Identifier: 187935446
GI number: 187935446
Start: 2777402
End: 2779429
Strand: Reverse
Name: yqiI [H]
Synonym: CLL_A2658
Alternate gene names: 187935446
Gene position: 2779429-2777402 (Counterclockwise)
Preceding gene: 187932962
Following gene: 187934153
Centisome position: 73.14
GC content: 30.72
Gene sequence:
>2028_bases TTGAACATTAAGAAGAAATTTATTATTTCAATGTTTGCTGTTGCAATTATGTTAATGGCAATTCCAACAATGAATGTACA AGCTGCAATTAGCGATAATAAAATAATATCAGATAATGATATAACAGTAAAAGAAGCTAAAAATTGGGCTAAATCTAAAG GCGCAACTAAAAACTTTATTGGTTTAGCAGATTTATATTGGGAATATTCATCTGATTGTGGTGATGTAAACCCTGCAGTA GCATATGTACAAGCTGCCAAAGAAACTGGATATGGTAAGTTTACTGGTGTTTTAAATGAAAGTTATAATAATCCTTGTGG GCTTAAGACAGCAACAGGTGGGGATGACAATGACAAGAATGCTCATGAAAAATTTGATAATTGGGATGAAGGAGTACAAG CTCATATGGACCATTTAGCATTATATGCAGGTGCTAAAGGATATCCTAAAAGTGATAGTTATGATCCAAGACATTTTAGA ACTATTAAGGGAAAAGCTAAAACAATAAAAGAATTAGGTGGAGTTTGGGCTCCAAGTGCTACATATGGTGAGGAAGTAAA TGCACTTTATACTGATTTATTAAAGTATTCTGGAGCTGACGTAGAAGATGGTGATGATAAAGATAACTCATCTAAATTAT CACCCAATCCAGGTGTGCAAGAAAGTAAACCTAATTTACCAAATGTAAAAGAAATTATTAATACAATTAGTAATGAGAAT AGTGGTAATGTTAATATTTCATCTAATATTGGTTGGAGATACGAAAATGGATCTTGGAGTTACTATAGATCAGATAATAC AAAAGCTACTGGTTGGATAAACCCAGATGGCAATTGGTATTATCTAAAAGATAATGGGAGTATGGCCACTGGATGGTTAA ATATAAATAACACATGGTATTATTTAAAAAGCTCAGGAGCAATGGCAAAAGGATGGCTTAATATTAATGGAACGTGGTAT TATTTAAAAGATAGTGGTGCTATGATAAATGGACTTAATAATATAAATAATAAAATGTATTATTTTGAAAATGAGGGTGC AATGAAAGTCGGTTGGAAAAATATTAATAATTATTGGTACTACTTTAGTTTAAATGGTGATATGCAAAGTGGATGGATCA CAGAGAATGGAACAAGATATTATTTATATGATACAGGGGCAATGGCAAAGGGATGGATTAATATAGATAATACCTGGTAT TTCTTAAATGATAATGGATCTATTGCAACAGGTTGGAAGTCAAGCAATGGAGATAATTATTATTTAGATGTAAGCACAGG AAAGATGCTAGTTAATACTGTAATTAATGGATATACTATTGGACTTGATGGAAAAAGAATGAATTCATCTTCTGAGGAAG ATTCCAATAAAGATAAAAACAATAATAAAACTTCAAATAAAAAAACTATTGTAATAGATCCGGGTCATGATTATGGCAAA GATTATGGATCTGAAAACAAAATTGATGGGACAACTTATAGTGAAACAGATTTAAATATACAAGTTGCATCTAAACTTAA GAATGAATTAGAGAATAGAGACTTTAATGTAATAATGACAAGAAAAGCTAAAGAAAAACCATCTTATGGATCTTTAACAG CAAGTCTTTCTCATAAAACAGATACAGCTAATGATGAAAATGCCGATTTCTTTATAAGCATCCATCATAATTCAGCAGTA GAAACTGCTAAGGGTGTTGAAAGTTATTATAGTACAGCACCTAAAGATGATAAGTATGGTGGGAATTTAGATTACAATAG ACTTGAGAAGAGTAAAAAAATGGCTAAAGTTATAAATGATAGCATTGTAAAAGTTATTGATACTAAAGATCGTGGCGTAA AAAATGATGCTGAACGTACTTTATTTGTACTTAGAAATACTAATATGCCAGCAGTTTTAGTTGAAGTTGGATTTATAACA AATCCAGAAGAAGCTGAAAGATGTGCAGATTCATATTATCAAGAAAAAGTTGCAAAGGCAATTGCTGAGGCAATTGATGA AAACTTTAATATAATATCAAATAAATAA
Upstream 100 bases:
>100_bases AGAATACTCTTAATAAAAAATTAATATATTAAAATGGAATATTATGTAGTTAAAACGTGTATTTAGTGTTAAAATATAAC ATAAAAGGGGTTGAGAAATA
Downstream 100 bases:
>100_bases TATAATCTCATAAATAGTTTTATTTTTATAAAGCTATTTATGGGATTTTTTATATTTAAAGTATTGATGATAACATTCGA TATAATTAGCATATAAACTA
Product: surface protein PspC
Products: Hydrolyzed cell wall glycopeptides; N-acetylmuramoyl residues; L-amino acid residues [C]
Alternate protein names: NA
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MNIKKKFIISMFAVAIMLMAIPTMNVQAAISDNKIISDNDITVKEAKNWAKSKGATKNFIGLADLYWEYSSDCGDVNPAV AYVQAAKETGYGKFTGVLNESYNNPCGLKTATGGDDNDKNAHEKFDNWDEGVQAHMDHLALYAGAKGYPKSDSYDPRHFR TIKGKAKTIKELGGVWAPSATYGEEVNALYTDLLKYSGADVEDGDDKDNSSKLSPNPGVQESKPNLPNVKEIINTISNEN SGNVNISSNIGWRYENGSWSYYRSDNTKATGWINPDGNWYYLKDNGSMATGWLNINNTWYYLKSSGAMAKGWLNINGTWY YLKDSGAMINGLNNINNKMYYFENEGAMKVGWKNINNYWYYFSLNGDMQSGWITENGTRYYLYDTGAMAKGWINIDNTWY FLNDNGSIATGWKSSNGDNYYLDVSTGKMLVNTVINGYTIGLDGKRMNSSSEEDSNKDKNNNKTSNKKTIVIDPGHDYGK DYGSENKIDGTTYSETDLNIQVASKLKNELENRDFNVIMTRKAKEKPSYGSLTASLSHKTDTANDENADFFISIHHNSAV ETAKGVESYYSTAPKDDKYGGNLDYNRLEKSKKMAKVINDSIVKVIDTKDRGVKNDAERTLFVLRNTNMPAVLVEVGFIT NPEEAERCADSYYQEKVAKAIAEAIDENFNIISNK
Sequences:
>Translated_675_residues MNIKKKFIISMFAVAIMLMAIPTMNVQAAISDNKIISDNDITVKEAKNWAKSKGATKNFIGLADLYWEYSSDCGDVNPAV AYVQAAKETGYGKFTGVLNESYNNPCGLKTATGGDDNDKNAHEKFDNWDEGVQAHMDHLALYAGAKGYPKSDSYDPRHFR TIKGKAKTIKELGGVWAPSATYGEEVNALYTDLLKYSGADVEDGDDKDNSSKLSPNPGVQESKPNLPNVKEIINTISNEN SGNVNISSNIGWRYENGSWSYYRSDNTKATGWINPDGNWYYLKDNGSMATGWLNINNTWYYLKSSGAMAKGWLNINGTWY YLKDSGAMINGLNNINNKMYYFENEGAMKVGWKNINNYWYYFSLNGDMQSGWITENGTRYYLYDTGAMAKGWINIDNTWY FLNDNGSIATGWKSSNGDNYYLDVSTGKMLVNTVINGYTIGLDGKRMNSSSEEDSNKDKNNNKTSNKKTIVIDPGHDYGK DYGSENKIDGTTYSETDLNIQVASKLKNELENRDFNVIMTRKAKEKPSYGSLTASLSHKTDTANDENADFFISIHHNSAV ETAKGVESYYSTAPKDDKYGGNLDYNRLEKSKKMAKVINDSIVKVIDTKDRGVKNDAERTLFVLRNTNMPAVLVEVGFIT NPEEAERCADSYYQEKVAKAIAEAIDENFNIISNK >Mature_675_residues MNIKKKFIISMFAVAIMLMAIPTMNVQAAISDNKIISDNDITVKEAKNWAKSKGATKNFIGLADLYWEYSSDCGDVNPAV AYVQAAKETGYGKFTGVLNESYNNPCGLKTATGGDDNDKNAHEKFDNWDEGVQAHMDHLALYAGAKGYPKSDSYDPRHFR TIKGKAKTIKELGGVWAPSATYGEEVNALYTDLLKYSGADVEDGDDKDNSSKLSPNPGVQESKPNLPNVKEIINTISNEN SGNVNISSNIGWRYENGSWSYYRSDNTKATGWINPDGNWYYLKDNGSMATGWLNINNTWYYLKSSGAMAKGWLNINGTWY YLKDSGAMINGLNNINNKMYYFENEGAMKVGWKNINNYWYYFSLNGDMQSGWITENGTRYYLYDTGAMAKGWINIDNTWY FLNDNGSIATGWKSSNGDNYYLDVSTGKMLVNTVINGYTIGLDGKRMNSSSEEDSNKDKNNNKTSNKKTIVIDPGHDYGK DYGSENKIDGTTYSETDLNIQVASKLKNELENRDFNVIMTRKAKEKPSYGSLTASLSHKTDTANDENADFFISIHHNSAV ETAKGVESYYSTAPKDDKYGGNLDYNRLEKSKKMAKVINDSIVKVIDTKDRGVKNDAERTLFVLRNTNMPAVLVEVGFIT NPEEAERCADSYYQEKVAKAIAEAIDENFNIISNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002508 [H]
Pfam domain/function: PF01520 Amidase_3 [H]
EC number: 3.5.1.28 [C]
Molecular weight: Translated: 75435; Mature: 75435
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKKKFIISMFAVAIMLMAIPTMNVQAAISDNKIISDNDITVKEAKNWAKSKGATKNFI CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEHHHHHHHHHHCCCCCCCE GLADLYWEYSSDCGDVNPAVAYVQAAKETGYGKFTGVLNESYNNPCGLKTATGGDDNDKN EHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEECCCCCCCCCC AHEKFDNWDEGVQAHMDHLALYAGAKGYPKSDSYDPRHFRTIKGKAKTIKELGGVWAPSA HHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHEEEECCHHHHHHHHCCCCCCCC TYGEEVNALYTDLLKYSGADVEDGDDKDNSSKLSPNPGVQESKPNLPNVKEIINTISNEN CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC SGNVNISSNIGWRYENGSWSYYRSDNTKATGWINPDGNWYYLKDNGSMATGWLNINNTWY CCCEEEECCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEEEECCEEE YLKSSGAMAKGWLNINGTWYYLKDSGAMINGLNNINNKMYYFENEGAMKVGWKNINNYWY EEECCCCEEEEEEEECEEEEEEECCCCEEECCCCCCCCEEEEECCCCEEEEEEECCCEEE YFSLNGDMQSGWITENGTRYYLYDTGAMAKGWINIDNTWYFLNDNGSIATGWKSSNGDNY EEEECCCCCCCEEECCCCEEEEEECCCCEECEEEECCEEEEECCCCCEEECCCCCCCCEE YLDVSTGKMLVNTVINGYTIGLDGKRMNSSSEEDSNKDKNNNKTSNKKTIVIDPGHDYGK EEEECCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH DYGSENKIDGTTYSETDLNIQVASKLKNELENRDFNVIMTRKAKEKPSYGSLTASLSHKT CCCCCCCCCCCEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEECCCC DTANDENADFFISIHHNSAVETAKGVESYYSTAPKDDKYGGNLDYNRLEKSKKMAKVIND CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC SIVKVIDTKDRGVKNDAERTLFVLRNTNMPAVLVEVGFITNPEEAERCADSYYQEKVAKA CCEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH IAEAIDENFNIISNK HHHHHCCCCEEECCC >Mature Secondary Structure MNIKKKFIISMFAVAIMLMAIPTMNVQAAISDNKIISDNDITVKEAKNWAKSKGATKNFI CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEHHHHHHHHHHCCCCCCCE GLADLYWEYSSDCGDVNPAVAYVQAAKETGYGKFTGVLNESYNNPCGLKTATGGDDNDKN EHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEECCCCCCCCCC AHEKFDNWDEGVQAHMDHLALYAGAKGYPKSDSYDPRHFRTIKGKAKTIKELGGVWAPSA HHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHEEEECCHHHHHHHHCCCCCCCC TYGEEVNALYTDLLKYSGADVEDGDDKDNSSKLSPNPGVQESKPNLPNVKEIINTISNEN CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC SGNVNISSNIGWRYENGSWSYYRSDNTKATGWINPDGNWYYLKDNGSMATGWLNINNTWY CCCEEEECCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEEEECCEEE YLKSSGAMAKGWLNINGTWYYLKDSGAMINGLNNINNKMYYFENEGAMKVGWKNINNYWY EEECCCCEEEEEEEECEEEEEEECCCCEEECCCCCCCCEEEEECCCCEEEEEEECCCEEE YFSLNGDMQSGWITENGTRYYLYDTGAMAKGWINIDNTWYFLNDNGSIATGWKSSNGDNY EEEECCCCCCCEEECCCCEEEEEECCCCEECEEEECCEEEEECCCCCEEECCCCCCCCEE YLDVSTGKMLVNTVINGYTIGLDGKRMNSSSEEDSNKDKNNNKTSNKKTIVIDPGHDYGK EEEECCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH DYGSENKIDGTTYSETDLNIQVASKLKNELENRDFNVIMTRKAKEKPSYGSLTASLSHKT CCCCCCCCCCCEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEECCCC DTANDENADFFISIHHNSAVETAKGVESYYSTAPKDDKYGGNLDYNRLEKSKKMAKVIND CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC SIVKVIDTKDRGVKNDAERTLFVLRNTNMPAVLVEVGFITNPEEAERCADSYYQEKVAKA CCEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH IAEAIDENFNIISNK HHHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: cell wall glycopeptides; D-lactyl-L-Ala [C]
Specific reaction: Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues [C]
General reaction: Carboxylic acid amide hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]