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The map label for this gene is yfkH [H]

Identifier: 187935176

GI number: 187935176

Start: 3551812

End: 3552660

Strand: Reverse

Name: yfkH [H]

Synonym: CLL_A3369

Alternate gene names: 187935176

Gene position: 3552660-3551812 (Counterclockwise)

Preceding gene: 187932407

Following gene: 187933892

Centisome position: 93.48

GC content: 25.44

Gene sequence:

>849_bases
ATGAGTCATAAAAAGATGAGTATAAGAGAAAAATTAAGGCTATTATTGCATTTGATTGTAAAAATAAAAAATGATGATAT
TTTTGCATTGGCATCTCAACTAGCATACTATTTACTTTTATCATTCTTTCCATTTATTATTTTCTTAATAACATTAGTAG
GATTTAGTAATATGGATTCTATACAGATATTGAATGGAATAAAAGCTGTAGTTCCAGAAGCGGTGTTTGATCTGACTTCT
TCAACAATAATTGAAGTTTTTGATAAACAATATACAGGATTATTAGAAATTTCAATTTTATTAGCTTTATGGACTTCATC
ATCTGGTTTTAGAGCTGTAATTAAAGGTGTAAATAAAGCTTATGATTTTAAAGAAAATAGATCGTTTATAAAAAGATTAA
TAATCTCTATGATAAGTGTAATAGCGTTAGCACTAACTATAATATTAGCATTATCTATGCTTGTATTTGGAAATGTAATA
GAAAATTATATAATAAAAATTATTCCATTTACAAAACTGGTTGTGATTTTATGGAACATATGTAGATATGTGTTCGTTGT
AATTATAATGGTATTTATATTTGCATCAATATATAGATTTACTCCTTCGAAAAGATTAAAGTGGAGAGACGTAATCCCTG
GATCAATATTTAGTACAGTTGGATGGATAATAACATCTTATGGTTTTTCTTTTTATATAGATAACTTTAGAAATTTCTCA
AGATTTTATGGAAGTCTTGGAGCTGTTTTTATATTGATGACTTGGTTATTCTTAGTTTCAATATTATTTATTTTAGGTGT
GGAAATAAATTGTGTGTTAGAACAATTTAAGAAGCAGTTATTAGAATAG

Upstream 100 bases:

>100_bases
ATTAATTCATTTAAAGGGATAAAGAAAATGTAGTATAAATATAATTTTATATAAGTATTAAATGAGATAATAATATCTAA
AGATAGGAAATGGTGATTTA

Downstream 100 bases:

>100_bases
TTATACTTTAATGAATATAATTACATTATCTGGATAGAATCAATAAAGAAATATTCAGGAGGTGTAATATAATGAATAAA
ATAGTATTAGTAGGAAATTT

Product: YihY family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSHKKMSIREKLRLLLHLIVKIKNDDIFALASQLAYYLLLSFFPFIIFLITLVGFSNMDSIQILNGIKAVVPEAVFDLTS
STIIEVFDKQYTGLLEISILLALWTSSSGFRAVIKGVNKAYDFKENRSFIKRLIISMISVIALALTIILALSMLVFGNVI
ENYIIKIIPFTKLVVILWNICRYVFVVIIMVFIFASIYRFTPSKRLKWRDVIPGSIFSTVGWIITSYGFSFYIDNFRNFS
RFYGSLGAVFILMTWLFLVSILFILGVEINCVLEQFKKQLLE

Sequences:

>Translated_282_residues
MSHKKMSIREKLRLLLHLIVKIKNDDIFALASQLAYYLLLSFFPFIIFLITLVGFSNMDSIQILNGIKAVVPEAVFDLTS
STIIEVFDKQYTGLLEISILLALWTSSSGFRAVIKGVNKAYDFKENRSFIKRLIISMISVIALALTIILALSMLVFGNVI
ENYIIKIIPFTKLVVILWNICRYVFVVIIMVFIFASIYRFTPSKRLKWRDVIPGSIFSTVGWIITSYGFSFYIDNFRNFS
RFYGSLGAVFILMTWLFLVSILFILGVEINCVLEQFKKQLLE
>Mature_281_residues
SHKKMSIREKLRLLLHLIVKIKNDDIFALASQLAYYLLLSFFPFIIFLITLVGFSNMDSIQILNGIKAVVPEAVFDLTSS
TIIEVFDKQYTGLLEISILLALWTSSSGFRAVIKGVNKAYDFKENRSFIKRLIISMISVIALALTIILALSMLVFGNVIE
NYIIKIIPFTKLVVILWNICRYVFVVIIMVFIFASIYRFTPSKRLKWRDVIPGSIFSTVGWIITSYGFSFYIDNFRNFSR
FYGSLGAVFILMTWLFLVSILFILGVEINCVLEQFKKQLLE

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32433; Mature: 32301

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SHKKMSIREKLRLLLHLIVKIKNDDIFALASQLAYYLLLSFFPFIIFLITLVGFSNMDS
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IQILNGIKAVVPEAVFDLTSSTIIEVFDKQYTGLLEISILLALWTSSSGFRAVIKGVNKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YDFKENRSFIKRLIISMISVIALALTIILALSMLVFGNVIENYIIKIIPFTKLVVILWNI
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CRYVFVVIIMVFIFASIYRFTPSKRLKWRDVIPGSIFSTVGWIITSYGFSFYIDNFRNFS
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFYGSLGAVFILMTWLFLVSILFILGVEINCVLEQFKKQLLE
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]