| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is toxA [H]
Identifier: 187934913
GI number: 187934913
Start: 3336467
End: 3338680
Strand: Reverse
Name: toxA [H]
Synonym: CLL_A3205
Alternate gene names: 187934913
Gene position: 3338680-3336467 (Counterclockwise)
Preceding gene: 187932849
Following gene: 187935261
Centisome position: 87.85
GC content: 31.66
Gene sequence:
>2214_bases TTGAATATTAAAAGTAAAATAGTGTCATTTTTATTTGTATTTGTAATGGCACTAGGTTTTATACCGTCAACTATGGTACA TGCATCTGTAAAAGATATAAACATAATATCAGAGACAGAAGCTACTGCAAGTGATGCAAAAAAATGGGCAAAAACTAAAG GTGCAACTGAAGAATTTTTAAGTCTAGCAGATCTTTATTGGAAGTATTCAGAGACTTGCGGAGATGTTAATCCAGCCATT GCATATGTACAATCAGCAAAAGAAACTGGATTTGGAAGATTTGGAGGGGTATTAGATTCGAGTTTTCGTAATCCATGTGG AATGAAGACCTCACAAGGTGGATCAGATGGAGATAAAAATGCTCATAAGAAGTTTAATACTTGGGATGAAGGTGTACAAG CTCACATGGATCATTTAGCACTTTATGCAGGGGCTAATGGTTATCCTAAAAGTGATACATATGATCCAAGACATTTCATA AGTATAAAAGGAAAATCACCAACTGTTAATTCATTAGGCGGAAAATGGGCCCCAAGTCTTACTTATGGAGAAGAAGTAAA TAAATATTACATAGAATTATGTAATTATTCAAATATTGCGGTTAATAAAGATGAGCAAAAAGATTATGAAGATAATTTAA ATGACAATGATGATAATGATTCATCTCATTTTTCACCACCAGGACCGGTTGAAAATAAGCCTAATTCTTTAATAACTGAT TCTGTAATTATGTTTGATAATTCTTTTGTTGAGCCAACACTTAATAGAGAAACAAATGTTAGTTCAGATATAGGTTGGAA AGAAGATGATGGAAAGTGGTACTATTATTATTCAGATGAAAGCAAGGCAGCTGGATGGATTAATCCTAATGGAAACTGGT ACTATTTAAATTCTACAGGGGAGATGTCTGTAGGATGGACGGATTTAGATAATTCTTGGTATTATTTTGATGATGATGGA ATTATGGTGACTGGTTGGAAGTGTATAAATAATAATTGGTATTACCTAAAGACAAGTGGTATAATGGCAACTGGATTTTT ACAAAATGCAAATGATTTATATTACCTAGATAAGTCAGGTGTTATGCTTTCAAAAGAAGGTTGGAATTTAATAGATGAAA AATGGTGCTATGTTGAAAATGGTGGTAACCTAAAATTAGGTTGGCTTTTAGACAATGGAAATAAGTATTATCTTCAAGGC GATGGAAGTATGGTTACAGGAATAAAGTTAATAGATAATAAAACTTATGTGTTTGATCAAAATGGAATCAACAAAACAGG TTGGACAAATATAAATAATTATTGGTATTACTTTAATGAAAACTCAGAAATGAGTACAGGATGGCTTAATTTAAATGGAA CTCATTATTATTTATATGATACTGGGGCTATGGCAACAGGATGGTTAAGTATTGATGATGATTGGTACCATTTTAATAAT GATGGAAGTAGAAGCTTAGGATGGGTACAAAGTGGTGGATATTACTATTACTTAGACTTACAAAGTGGAAAGCTACTTAA GAATACAAAAGTTGATGGTTATGAAATAGATAGTAATGGAAGACGAAAATCTGATAAAAATGATGTGATTTCAGGAAATA CCTCTAATAATGTAATTGTTGTTGATGCAGGTCATAACTTTGGTGGAGATGATGGAGCATATGCTACAAACAATGGAATT ACTTATTCAGAAAGAGACTTAAATATGGAAGTTGCAGTAAAACTTAAATCAGAACTTGAAAATAGAGGTTATACTGTTGC TATGACTAGAAATGAATCAGATAGAGAAACATTAGCAGCTATGCAGAGTCTTGATAAAAGAGTTAAATTAGCGAATGATC TTAATGCTACTTTATTTGTAAGTATACATCATAATTCAGCAGATGCAGTATCTGCAAATGGAGTTGAAGTATTTTATAGT ACTAATGCTCAAGACGATAGAATGGGTAGGAAATCACCTAATCAATTAAGAATTGAAAAGAGTAAAGCAATGGCAACAAG TATTGTAAATAATATCTGTAGTAAAACAGGCACTATAAATAGAGGACCTAAAGATGGGAATTTAAATGTTTGTAGAAATA CTAATATGCCTGCAATACTTATTGAATGTGGATTTATAACTAATGCTAATGAAGCTGCAAGATGTGCTGATTCAAATAAT CAAACAATTGTAGCAAAAGCAATAGCTGAGGCAATTCAAAATCAATTAAATTAA
Upstream 100 bases:
>100_bases ATTTACATTAAGAACTTCATGTGATAAAATTAGATTATATTGTAAGAAAAATGGATGATTATGTTAAAAAATGTGACAAC TAGGAAGGGGGAATACTATT
Downstream 100 bases:
>100_bases TGATAGAAAATAAGAGAAATTAAACAAAAGAATCTTCTACTTAAACATTAAGTTTAAGTAGAAGATTCTTTTCTTTTTTT TTCTATGGAAAATGAAACCA
Product: surface protein PspC
Products: Hydrolyzed cell wall glycopeptides; N-acetylmuramoyl residues; L-amino acid residues [C]
Alternate protein names: NA
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MNIKSKIVSFLFVFVMALGFIPSTMVHASVKDINIISETEATASDAKKWAKTKGATEEFLSLADLYWKYSETCGDVNPAI AYVQSAKETGFGRFGGVLDSSFRNPCGMKTSQGGSDGDKNAHKKFNTWDEGVQAHMDHLALYAGANGYPKSDTYDPRHFI SIKGKSPTVNSLGGKWAPSLTYGEEVNKYYIELCNYSNIAVNKDEQKDYEDNLNDNDDNDSSHFSPPGPVENKPNSLITD SVIMFDNSFVEPTLNRETNVSSDIGWKEDDGKWYYYYSDESKAAGWINPNGNWYYLNSTGEMSVGWTDLDNSWYYFDDDG IMVTGWKCINNNWYYLKTSGIMATGFLQNANDLYYLDKSGVMLSKEGWNLIDEKWCYVENGGNLKLGWLLDNGNKYYLQG DGSMVTGIKLIDNKTYVFDQNGINKTGWTNINNYWYYFNENSEMSTGWLNLNGTHYYLYDTGAMATGWLSIDDDWYHFNN DGSRSLGWVQSGGYYYYLDLQSGKLLKNTKVDGYEIDSNGRRKSDKNDVISGNTSNNVIVVDAGHNFGGDDGAYATNNGI TYSERDLNMEVAVKLKSELENRGYTVAMTRNESDRETLAAMQSLDKRVKLANDLNATLFVSIHHNSADAVSANGVEVFYS TNAQDDRMGRKSPNQLRIEKSKAMATSIVNNICSKTGTINRGPKDGNLNVCRNTNMPAILIECGFITNANEAARCADSNN QTIVAKAIAEAIQNQLN
Sequences:
>Translated_737_residues MNIKSKIVSFLFVFVMALGFIPSTMVHASVKDINIISETEATASDAKKWAKTKGATEEFLSLADLYWKYSETCGDVNPAI AYVQSAKETGFGRFGGVLDSSFRNPCGMKTSQGGSDGDKNAHKKFNTWDEGVQAHMDHLALYAGANGYPKSDTYDPRHFI SIKGKSPTVNSLGGKWAPSLTYGEEVNKYYIELCNYSNIAVNKDEQKDYEDNLNDNDDNDSSHFSPPGPVENKPNSLITD SVIMFDNSFVEPTLNRETNVSSDIGWKEDDGKWYYYYSDESKAAGWINPNGNWYYLNSTGEMSVGWTDLDNSWYYFDDDG IMVTGWKCINNNWYYLKTSGIMATGFLQNANDLYYLDKSGVMLSKEGWNLIDEKWCYVENGGNLKLGWLLDNGNKYYLQG DGSMVTGIKLIDNKTYVFDQNGINKTGWTNINNYWYYFNENSEMSTGWLNLNGTHYYLYDTGAMATGWLSIDDDWYHFNN DGSRSLGWVQSGGYYYYLDLQSGKLLKNTKVDGYEIDSNGRRKSDKNDVISGNTSNNVIVVDAGHNFGGDDGAYATNNGI TYSERDLNMEVAVKLKSELENRGYTVAMTRNESDRETLAAMQSLDKRVKLANDLNATLFVSIHHNSADAVSANGVEVFYS TNAQDDRMGRKSPNQLRIEKSKAMATSIVNNICSKTGTINRGPKDGNLNVCRNTNMPAILIECGFITNANEAARCADSNN QTIVAKAIAEAIQNQLN >Mature_737_residues MNIKSKIVSFLFVFVMALGFIPSTMVHASVKDINIISETEATASDAKKWAKTKGATEEFLSLADLYWKYSETCGDVNPAI AYVQSAKETGFGRFGGVLDSSFRNPCGMKTSQGGSDGDKNAHKKFNTWDEGVQAHMDHLALYAGANGYPKSDTYDPRHFI SIKGKSPTVNSLGGKWAPSLTYGEEVNKYYIELCNYSNIAVNKDEQKDYEDNLNDNDDNDSSHFSPPGPVENKPNSLITD SVIMFDNSFVEPTLNRETNVSSDIGWKEDDGKWYYYYSDESKAAGWINPNGNWYYLNSTGEMSVGWTDLDNSWYYFDDDG IMVTGWKCINNNWYYLKTSGIMATGFLQNANDLYYLDKSGVMLSKEGWNLIDEKWCYVENGGNLKLGWLLDNGNKYYLQG DGSMVTGIKLIDNKTYVFDQNGINKTGWTNINNYWYYFNENSEMSTGWLNLNGTHYYLYDTGAMATGWLSIDDDWYHFNN DGSRSLGWVQSGGYYYYLDLQSGKLLKNTKVDGYEIDSNGRRKSDKNDVISGNTSNNVIVVDAGHNFGGDDGAYATNNGI TYSERDLNMEVAVKLKSELENRGYTVAMTRNESDRETLAAMQSLDKRVKLANDLNATLFVSIHHNSADAVSANGVEVFYS TNAQDDRMGRKSPNQLRIEKSKAMATSIVNNICSKTGTINRGPKDGNLNVCRNTNMPAILIECGFITNANEAARCADSNN QTIVAKAIAEAIQNQLN
Specific function: Only after the enteral delivery of the enterotoxin A may the characteristic disease called pseudomembranous colitis be induced [H]
COG id: COG5263
COG function: function code R; FOG: Glucan-binding domain (YG repeat)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 32 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR007577 - InterPro: IPR020974 [H]
Pfam domain/function: PF01473 CW_binding_1; PF04488 Gly_transf_sug; PF11713 Peptidase_C80 [H]
EC number: 3.5.1.28 [C]
Molecular weight: Translated: 82349; Mature: 82349
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKSKIVSFLFVFVMALGFIPSTMVHASVKDINIISETEATASDAKKWAKTKGATEEFL CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHH SLADLYWKYSETCGDVNPAIAYVQSAKETGFGRFGGVLDSSFRNPCGMKTSQGGSDGDKN HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCHHHHCCCCCCCCCCCCCCCCCCCC AHKKFNTWDEGVQAHMDHLALYAGANGYPKSDTYDPRHFISIKGKSPTVNSLGGKWAPSL HHHCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHCCCCCCCCCC TYGEEVNKYYIELCNYSNIAVNKDEQKDYEDNLNDNDDNDSSHFSPPGPVENKPNSLITD CCHHHHCEEEEEEECCCCEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC SVIMFDNSFVEPTLNRETNVSSDIGWKEDDGKWYYYYSDESKAAGWINPNGNWYYLNSTG EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEECCCC EMSVGWTDLDNSWYYFDDDGIMVTGWKCINNNWYYLKTSGIMATGFLQNANDLYYLDKSG CEEEEEEECCCCEEEECCCCEEEEEEEEECCCEEEEEECCEEEEEEECCCCCEEEECCCC VMLSKEGWNLIDEKWCYVENGGNLKLGWLLDNGNKYYLQGDGSMVTGIKLIDNKTYVFDQ EEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEEEECCCEEEEEC NGINKTGWTNINNYWYYFNENSEMSTGWLNLNGTHYYLYDTGAMATGWLSIDDDWYHFNN CCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCEEEEEEECCCEEEEEEEECCCEEEECC DGSRSLGWVQSGGYYYYLDLQSGKLLKNTKVDGYEIDSNGRRKSDKNDVISGNTSNNVIV CCCCCCCEEECCCEEEEEECCCCCEEECCCCCCEEECCCCCCCCCCCCEECCCCCCCEEE VDAGHNFGGDDGAYATNNGITYSERDLNMEVAVKLKSELENRGYTVAMTRNESDRETLAA EECCCCCCCCCCCEEECCCCEEECCCCCEEEEEEEHHHHHHCCEEEEEECCCCHHHHHHH MQSLDKRVKLANDLNATLFVSIHHNSADAVSANGVEVFYSTNAQDDRMGRKSPNQLRIEK HHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCEEEEEECCCCHHHCCCCCCCCEEEEH SKAMATSIVNNICSKTGTINRGPKDGNLNVCRNTNMPAILIECGFITNANEAARCADSNN HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECEECCCCHHHHHCCCCC QTIVAKAIAEAIQNQLN CEEHHHHHHHHHHHHCC >Mature Secondary Structure MNIKSKIVSFLFVFVMALGFIPSTMVHASVKDINIISETEATASDAKKWAKTKGATEEFL CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHH SLADLYWKYSETCGDVNPAIAYVQSAKETGFGRFGGVLDSSFRNPCGMKTSQGGSDGDKN HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCHHHHCCCCCCCCCCCCCCCCCCCC AHKKFNTWDEGVQAHMDHLALYAGANGYPKSDTYDPRHFISIKGKSPTVNSLGGKWAPSL HHHCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHCCCCCCCCCC TYGEEVNKYYIELCNYSNIAVNKDEQKDYEDNLNDNDDNDSSHFSPPGPVENKPNSLITD CCHHHHCEEEEEEECCCCEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC SVIMFDNSFVEPTLNRETNVSSDIGWKEDDGKWYYYYSDESKAAGWINPNGNWYYLNSTG EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEECCCC EMSVGWTDLDNSWYYFDDDGIMVTGWKCINNNWYYLKTSGIMATGFLQNANDLYYLDKSG CEEEEEEECCCCEEEECCCCEEEEEEEEECCCEEEEEECCEEEEEEECCCCCEEEECCCC VMLSKEGWNLIDEKWCYVENGGNLKLGWLLDNGNKYYLQGDGSMVTGIKLIDNKTYVFDQ EEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEEEECCCEEEEEC NGINKTGWTNINNYWYYFNENSEMSTGWLNLNGTHYYLYDTGAMATGWLSIDDDWYHFNN CCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCEEEEEEECCCEEEEEEEECCCEEEECC DGSRSLGWVQSGGYYYYLDLQSGKLLKNTKVDGYEIDSNGRRKSDKNDVISGNTSNNVIV CCCCCCCEEECCCEEEEEECCCCCEEECCCCCCEEECCCCCCCCCCCCEECCCCCCCEEE VDAGHNFGGDDGAYATNNGITYSERDLNMEVAVKLKSELENRGYTVAMTRNESDRETLAA EECCCCCCCCCCCEEECCCCEEECCCCCEEEEEEEHHHHHHCCEEEEEECCCCHHHHHHH MQSLDKRVKLANDLNATLFVSIHHNSADAVSANGVEVFYSTNAQDDRMGRKSPNQLRIEK HHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCEEEEEECCCCHHHCCCCCCCCEEEEH SKAMATSIVNNICSKTGTINRGPKDGNLNVCRNTNMPAILIECGFITNANEAARCADSNN HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECEECCCCHHHHHCCCCC QTIVAKAIAEAIQNQLN CEEHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: cell wall glycopeptides; D-lactyl-L-Ala [C]
Specific reaction: Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues [C]
General reaction: Carboxylic acid amide hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2109310; 2105276 [H]