| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is polA [H]
Identifier: 187933407
GI number: 187933407
Start: 2759376
End: 2761991
Strand: Reverse
Name: polA [H]
Synonym: CLL_A2645
Alternate gene names: 187933407
Gene position: 2761991-2759376 (Counterclockwise)
Preceding gene: 187935310
Following gene: 187934279
Centisome position: 72.68
GC content: 26.34
Gene sequence:
>2616_bases ATGAAAAGATTATTAATTTTAGATTCAAATTCGCTTATGAATAGGGCATTTTATGCTTTACCTCCTCTTACTAATGATGA CGGTGTAAATACTAATGCTATTTATGGCTTTACAAATATGTTATTTAAAATGAAAGATGAAATAAATCCAGATAATATAA TTGCAACATTTGATAAGAAGTCGCCAACATTTAGACATAAAGAATACTCAGAGTATAAAGCTGGAAGAAAGAAAATGCCA CCAGAACTTGGTGAACAATTTCCAATTATAAAAGAATTACTTAAATATATGGGAATAAAGACTTTTGAAATAGATGGTTT TGAAGCAGATGACATAATAGGAACTATATCAAAATTTGGTGAAGAAAATGATATGGAAGTTTATATAGTTACAGGAGATA AGGATGCTCTTCAATTAGCATCAGAAAAAACAAAAGTAGTTATAACTAAGAAAGGTGTTACTGAAACAGCAATTTATGAT TATAAAGCATTTATGGATGAATTTGAAATAACACCAACTCAATTTATAGACGTAAAAGGGCTTATGGGAGATAAATCTGA TAATATACCAGGGGTACCAGGAGTTGGAGAGAAGACAGCATTTAAACTTATTAAAGAATATGGAACACTTGAAGATGTTT TAAAGCATATACCAGAGATAAGTGGTAAGAAGTTAAAAGAAAACTTAGAAAATAATATGGAACAAGCAATATTTTCTAAG AAATTAGCTACAATAATGAGGGAAGTACCATTAGACATTAATTTATCAGATATAGAAAATGCTGATGAAGTAAATTTAGT AGAACTTAAAAAATTATCTAAAAATCTTAAATTAAAATCAGTACTATCAAAGTATGATTTAGATAATAATGAAGCAGAGT TACAAGAGATAGCTAATATAGAAATAAGTAAAATAGAAACAATTGAAGAGATGGAAGAGGTATTATTAAGTATTAAAGAT AGAAGTTATATTTTATTTACATTAAATGATGCATCTAAATACTCTACAATAGAATTAGAATACTTAATATTAGGCGAAGA AGGCAGATCACATGTTATAGATTTTAAGCTAGTAAGTATGTCAAATAGAGAAAAAGCTTTAAATTTATTAAGAACCTTTA TGGAAGATAAAACTGTTAAAAAAGTAATACATGATAGCAAAAATTTAATTACATTTTTAAACAAGTATGATATAGATATT CAAGGTTTTGATTTTGATACAGCCATAGCAGCTTATTTAATAGACTCTTCAAAAGCCAATTATGAAGTTTTTGATTTAAT TAATAGATTTTTAGAAAAAGATATAAAGTCTGATTGTGATGATCTAAAAGCAATATGCAGCAGTTATTTAACAAAATTAT ATGAAAAGTTAAAAGAAAGGCTTCATAAAGAAGATATGGATGAATTGTATTATAAAGTAGAACATCCATTAATATATGTA CTTTCTTCAATGGAAAGCATTGGATTCAAAATAAATAAAGATAAATTAGAAGAACTTAGAATAAAATTCAAAGAACAAAT AGAAAAGACAGAAAAAGAAATCTATGAATTAGCAGACGAAGAATTCAATGTAAGCTCACCAAAGCAACTTGGAAAAATAC TATTTGAAAAACTTGATTTGCCAGTAATTAAGAAAACTAAAACAGGGTATTCAACAAATCAAGAAGTTTTAGAAAAATTA ATAGACAAACATCCTATAATAACTAAAGTTATGTATTATAGACAAATTACTAAAATTAATTCTACTTATGTAGAGGGACT TAAGAATGTAATAGATATAGATGGATGTATACATTCAAATTTCAATCAAACTGTCACAACTACAGGAAGATTATCAAGTA CTGAACCTAACCTTCAAAATATACCAATAAAATATGAAATGGGAAAAGAAATAAGAAAAGTGTTTATACCACAGGATAGT GATGATATATTAATATCTTGCGATTATTCTCAAATAGAATTAAGAGTACTTGCACATGTAGCAGATGATAAAAATATGAT AGATGCATTTGAACATCATAGTGATATACATACCAAAACAGCTTCAGAAGTTTTTAAAGTTCCTGTAGATGAAGTTACAT CTACAATGAGAAGTAATGCAAAAGCAGTAAATTTTGGTATAGTTTATGGAATAAGTGACTTTAGTTTAGCACAAGATTTA AAAATTACTAAAAAAGAAGCAGCAGAGTATATGGCTATTTATTTTGAAAGATATCCTAAGATAAAGGAATATTTAAATTA TGTAAGTGAATACGCTAAAGAAAAAGGTTATGTATTAACTATATTAAACAGAAGAAGATTCATACCAGAAATAAAATCTT CAAATAAAATTGTAAAAGCATTAGGTGAAAGATTAGCTATGAATGCGCCAATACAAGGAAGTGCAGCTGATATTATTAAA CTTGCTATGGTTAATGTTTATAATAAGTTAAGAGAAAAGAATTTAAATAGTGAATTAATTCTTCAAGTACACGATGAACT TATATTAAATGTTAAAAAAGATGAGTTTGATATAGTTAAACAATTGGTTATTGAAGAAATGGAAAAGGCTATTAAATTAA ATGTAGCACTTGATGTAGATTTAAAATACGGTTATACATGGTATGATGCAAAATAA
Upstream 100 bases:
>100_bases AGAATAATGATTTTACTTGATAAAGATAGTATAATATTAATGTATAACTAATTTTATATACAATAAAAGTATCTTAAAGA TATTCAGGAGGATTATATCA
Downstream 100 bases:
>100_bases AAATGGGAGATGAACTTTTTAAATGATAAAGATAGGGTTAACAGGGGGTATAGGTACTGGAAAAAGTACTATATCAGATA TATTTAGAAGTGAAAACTTT
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 871; Mature: 871
Protein sequence:
>871_residues MKRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEINPDNIIATFDKKSPTFRHKEYSEYKAGRKKMP PELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISKFGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYD YKAFMDEFEITPTQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGTLEDVLKHIPEISGKKLKENLENNMEQAIFSK KLATIMREVPLDINLSDIENADEVNLVELKKLSKNLKLKSVLSKYDLDNNEAELQEIANIEISKIETIEEMEEVLLSIKD RSYILFTLNDASKYSTIELEYLILGEEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKYDIDI QGFDFDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDCDDLKAICSSYLTKLYEKLKERLHKEDMDELYYKVEHPLIYV LSSMESIGFKINKDKLEELRIKFKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKL IDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDS DDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDL KITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIK LAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIKLNVALDVDLKYGYTWYDAK
Sequences:
>Translated_871_residues MKRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEINPDNIIATFDKKSPTFRHKEYSEYKAGRKKMP PELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISKFGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYD YKAFMDEFEITPTQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGTLEDVLKHIPEISGKKLKENLENNMEQAIFSK KLATIMREVPLDINLSDIENADEVNLVELKKLSKNLKLKSVLSKYDLDNNEAELQEIANIEISKIETIEEMEEVLLSIKD RSYILFTLNDASKYSTIELEYLILGEEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKYDIDI QGFDFDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDCDDLKAICSSYLTKLYEKLKERLHKEDMDELYYKVEHPLIYV LSSMESIGFKINKDKLEELRIKFKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKL IDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDS DDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDL KITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIK LAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIKLNVALDVDLKYGYTWYDAK >Mature_871_residues MKRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEINPDNIIATFDKKSPTFRHKEYSEYKAGRKKMP PELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISKFGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYD YKAFMDEFEITPTQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGTLEDVLKHIPEISGKKLKENLENNMEQAIFSK KLATIMREVPLDINLSDIENADEVNLVELKKLSKNLKLKSVLSKYDLDNNEAELQEIANIEISKIETIEEMEEVLLSIKD RSYILFTLNDASKYSTIELEYLILGEEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKYDIDI QGFDFDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDCDDLKAICSSYLTKLYEKLKERLHKEDMDELYYKVEHPLIYV LSSMESIGFKINKDKLEELRIKFKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKL IDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDS DDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDL KITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIK LAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIKLNVALDVDLKYGYTWYDAK
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=508, Percent_Identity=32.6771653543307, Blast_Score=253, Evalue=4e-67, Organism=Homo sapiens, GI139394648, Length=533, Percent_Identity=28.3302063789869, Blast_Score=215, Evalue=2e-55, Organism=Escherichia coli, GI1790294, Length=540, Percent_Identity=40.5555555555556, Blast_Score=377, Evalue=1e-105, Organism=Escherichia coli, GI226510970, Length=211, Percent_Identity=28.9099526066351, Blast_Score=105, Evalue=1e-23, Organism=Caenorhabditis elegans, GI86563272, Length=378, Percent_Identity=30.4232804232804, Blast_Score=182, Evalue=6e-46, Organism=Drosophila melanogaster, GI17933644, Length=550, Percent_Identity=29.2727272727273, Blast_Score=226, Evalue=5e-59,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 100201; Mature: 100201
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEINPDNIIATFDKK CCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCC SPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISKFG CCCCCCCHHHHHHCCCCCCCHHHCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHC EENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDVKG CCCCCEEEEEECCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHEEEECC LMGDKSDNIPGVPGVGEKTAFKLIKEYGTLEDVLKHIPEISGKKLKENLENNMEQAIFSK CCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH KLATIMREVPLDINLSDIENADEVNLVELKKLSKNLKLKSVLSKYDLDNNEAELQEIANI HHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHCC EISKIETIEEMEEVLLSIKDRSYILFTLNDASKYSTIELEYLILGEEGRSHVIDFKLVSM HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEECC SNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKAN CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCC YEVFDLINRFLEKDIKSDCDDLKAICSSYLTKLYEKLKERLHKEDMDELYYKVEHPLIYV CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH LSSMESIGFKINKDKLEELRIKFKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDL HHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC PVIKKTKTGYSTNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSN CEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC FNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAHV CCCEEEECCCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHH ADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDL HCCCHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHH KITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKA HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHH LGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEEHHHHHEECCCHHHHHHH QLVIEEMEKAIKLNVALDVDLKYGYTWYDAK HHHHHHHHHHHEEEEEEEEEEECCEEEECCC >Mature Secondary Structure MKRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEINPDNIIATFDKK CCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCC SPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISKFG CCCCCCCHHHHHHCCCCCCCHHHCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHC EENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDVKG CCCCCEEEEEECCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHEEEECC LMGDKSDNIPGVPGVGEKTAFKLIKEYGTLEDVLKHIPEISGKKLKENLENNMEQAIFSK CCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH KLATIMREVPLDINLSDIENADEVNLVELKKLSKNLKLKSVLSKYDLDNNEAELQEIANI HHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHCC EISKIETIEEMEEVLLSIKDRSYILFTLNDASKYSTIELEYLILGEEGRSHVIDFKLVSM HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEECC SNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKAN CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCC YEVFDLINRFLEKDIKSDCDDLKAICSSYLTKLYEKLKERLHKEDMDELYYKVEHPLIYV CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH LSSMESIGFKINKDKLEELRIKFKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDL HHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC PVIKKTKTGYSTNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSN CEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC FNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAHV CCCEEEECCCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHH ADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDL HCCCHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHH KITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKA HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHH LGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEEHHHHHEECCCHHHHHHH QLVIEEMEKAIKLNVALDVDLKYGYTWYDAK HHHHHHHHHHHEEEEEEEEEEECCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]