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The map label for this gene is rhaS [H]

Identifier: 187932497

GI number: 187932497

Start: 1621874

End: 1622722

Strand: Reverse

Name: rhaS [H]

Synonym: CLL_A1567

Alternate gene names: 187932497

Gene position: 1622722-1621874 (Counterclockwise)

Preceding gene: 187935115

Following gene: 187935691

Centisome position: 42.7

GC content: 23.2

Gene sequence:

>849_bases
ATGAATACAATTGATTACGGAAATAAATCTGGATACTTGTATAGTGATTTTAAATTATTTCATATAAAAGATAAGAAAAA
TCAAGAATTTGAATTCCACTACCATGAGTTCAATAAAATAATTATATTTTTATCCGGAAAAGTAACTTATCTAATAGAAG
GAAAAGCTTATTATCTAAAACCTTGGGATATACTTCTTGTAAATAATCATGATGTACATAAACCATTAATAGATTCATCA
GAAGCTTATGAAAGAATAGTAATTTGGGTTAATTCAAATTTCATAGAATCTCACAACTATAATAATTGTGATTTGATGAC
TTGTTTTAAATTAGCTAATAAAAAGAGCTTTAATCTTATTAGACTTGATATCAAATTACAGGATTTATTAAAAAGTATTA
TTAGTTCATTAGAGTCTTCATTAAATTCAAATGATTTTGGGAGCAAACTTTTAAATAATTCATTATTTATCCAGTTCTTA
ATTTATTTAAATAGGATTTACTTAGAAGACATGTTTATAAGTGATGAATCAGCTCTTAAATACGACAAACAAATTGAAGA
AATATTAAAATATATAAATACTAATATCTCAAAAGATCTTTCTATTGAATTTTTAGCAAAGGAATTTTTTATAAGTAAAT
ATTATTTAATGCATAAATTCAAAAAAGAAACTGGCTATACTCTTCATAATTATATATTGCAAAAAAGGTTATTAGTCGCA
AAGGATCTCATAGAAAATGGTGAAGCTGTTTTAAAAGCAGCTACTAAATGTGGATTTAATGATTATTCTAGTTTCCTACG
TTCTTTTAAAAAATTATTTAATAAATCACCTCGTGAACTTTTTTATTAA

Upstream 100 bases:

>100_bases
TATATACAGAATTTTAACTATAAATAGTGCATATATTGCTTGAAATATTGTAAAAAGTGCTCTATGATTTATATATCTTA
TTCGAAAGGTTGTCATTTGA

Downstream 100 bases:

>100_bases
TTAGTATATACATTACTTAAATTAAATGTAATGTATATATTATTTTTCTAAGGAAAAGATAAATACTGATTACAGTGTTA
CAGGAGGAAAATTCAGATAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNTIDYGNKSGYLYSDFKLFHIKDKKNQEFEFHYHEFNKIIIFLSGKVTYLIEGKAYYLKPWDILLVNNHDVHKPLIDSS
EAYERIVIWVNSNFIESHNYNNCDLMTCFKLANKKSFNLIRLDIKLQDLLKSIISSLESSLNSNDFGSKLLNNSLFIQFL
IYLNRIYLEDMFISDESALKYDKQIEEILKYINTNISKDLSIEFLAKEFFISKYYLMHKFKKETGYTLHNYILQKRLLVA
KDLIENGEAVLKAATKCGFNDYSSFLRSFKKLFNKSPRELFY

Sequences:

>Translated_282_residues
MNTIDYGNKSGYLYSDFKLFHIKDKKNQEFEFHYHEFNKIIIFLSGKVTYLIEGKAYYLKPWDILLVNNHDVHKPLIDSS
EAYERIVIWVNSNFIESHNYNNCDLMTCFKLANKKSFNLIRLDIKLQDLLKSIISSLESSLNSNDFGSKLLNNSLFIQFL
IYLNRIYLEDMFISDESALKYDKQIEEILKYINTNISKDLSIEFLAKEFFISKYYLMHKFKKETGYTLHNYILQKRLLVA
KDLIENGEAVLKAATKCGFNDYSSFLRSFKKLFNKSPRELFY
>Mature_282_residues
MNTIDYGNKSGYLYSDFKLFHIKDKKNQEFEFHYHEFNKIIIFLSGKVTYLIEGKAYYLKPWDILLVNNHDVHKPLIDSS
EAYERIVIWVNSNFIESHNYNNCDLMTCFKLANKKSFNLIRLDIKLQDLLKSIISSLESSLNSNDFGSKLLNNSLFIQFL
IYLNRIYLEDMFISDESALKYDKQIEEILKYINTNISKDLSIEFLAKEFFISKYYLMHKFKKETGYTLHNYILQKRLLVA
KDLIENGEAVLKAATKCGFNDYSSFLRSFKKLFNKSPRELFY

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=261, Percent_Identity=23.3716475095785, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081928, Length=94, Percent_Identity=35.1063829787234, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33452; Mature: 33452

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIDYGNKSGYLYSDFKLFHIKDKKNQEFEFHYHEFNKIIIFLSGKVTYLIEGKAYYLK
CCCCCCCCCCCEEEECEEEEEEECCCCCCEEEEEEEEEEEEEEEECCEEEEEECCEEEEC
PWDILLVNNHDVHKPLIDSSEAYERIVIWVNSNFIESHNYNNCDLMTCFKLANKKSFNLI
CEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCHHHHHHHHCCCCCCEEE
RLDIKLQDLLKSIISSLESSLNSNDFGSKLLNNSLFIQFLIYLNRIYLEDMFISDESALK
EEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCHHHH
YDKQIEEILKYINTNISKDLSIEFLAKEFFISKYYLMHKFKKETGYTLHNYILQKRLLVA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
KDLIENGEAVLKAATKCGFNDYSSFLRSFKKLFNKSPRELFY
HHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MNTIDYGNKSGYLYSDFKLFHIKDKKNQEFEFHYHEFNKIIIFLSGKVTYLIEGKAYYLK
CCCCCCCCCCCEEEECEEEEEEECCCCCCEEEEEEEEEEEEEEEECCEEEEEECCEEEEC
PWDILLVNNHDVHKPLIDSSEAYERIVIWVNSNFIESHNYNNCDLMTCFKLANKKSFNLI
CEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCHHHHHHHHCCCCCCEEE
RLDIKLQDLLKSIISSLESSLNSNDFGSKLLNNSLFIQFLIYLNRIYLEDMFISDESALK
EEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCHHHH
YDKQIEEILKYINTNISKDLSIEFLAKEFFISKYYLMHKFKKETGYTLHNYILQKRLLVA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
KDLIENGEAVLKAATKCGFNDYSSFLRSFKKLFNKSPRELFY
HHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA