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The map label for this gene is copD [H]

Identifier: 187928918

GI number: 187928918

Start: 1926726

End: 1927655

Strand: Reverse

Name: copD [H]

Synonym: Rpic_1837

Alternate gene names: 187928918

Gene position: 1927655-1926726 (Counterclockwise)

Preceding gene: 187928919

Following gene: 187928917

Centisome position: 48.89

GC content: 58.39

Gene sequence:

>930_bases
ATGGCAGACGATTGGCTCAATATCGCCCTGCGCTTTGCGCTATACGTGGATCTGACGATCCTGTTTGGAGTCTCGTTATT
CGGTGCCTACGCTCTGCGCCCCGACCATCGAAGCTCGGCGATTGCGCGCCGGTATGTCTGCGCTATTGGTGTCGCCGCAG
CTTCCGGCATCGTGCTGTCGCTTTGGAGTATCGTAGTGACGGCCAAAGCGATGACGGGAGCCGCCAAATATGCGGAGTTG
ACCAGCCACGTCTTCGGCATGATGCTGAGTAGCACCGCGGTTGGCATTGGGTGGATGGTGCGCATCGCGGCGCTGGCTGC
TTGTTTAATCATCGCCATGTGTGTGCGTAGGCGACAGACTCTGCCTTTTAGTATTTTTGCCGTATTAGGGGCGGTAGCGC
TGGCAACAGTGGCCTGGGCGGGGCATGGCGCGATGGACGATGGTTCGCGTGGATACGTTCACATCACCGCCGACATCGCC
CACTTGTTAGCTGCGGGCGCATGGGTTGGATCGCTGACAGCGTTTGTGTTGCTTGCGCGGACACCACAGGCGGCTTCATT
GGAGTCGGTGGAAATCCTCAACCATACGTCCAACGGCTTCGCCCGTCTTGGGACGTTGATTGTTGCCACGCTGCTTGCAA
CAGGCGTCGTCAACTATCTGTTGATTGTGGGCCCGACAATCGACGGATTGGCAACTTCGGCATACGGCGTCCTGTTGTTG
GCCAAGTTGGCAATGTTCGGGCTCATGCTCGGGCTGGCGTCGGCGAATCGTTATCTGTTGAGTCCTCAACTTGAAATCGC
TATGCGCAGCGGCGATCACGCTGGCGCGGTCATGACATTGCGCCGGAGTCTGATCACGGAGGCCAGCCTTGCCGTGATAA
TACTGGCTCTGGTTGCTTGGCTGGGTGTGCTTTCTCCGCCCGGGACCTAA

Upstream 100 bases:

>100_bases
CAGCCGCTGATGACGGGTACGTACAAGGTCGAATGGCGTGCTGTCTCGTCGGATACGCACCCGATGTCGGGGAACTTCTC
GTTCAAGGTGAAGTAAGGTT

Downstream 100 bases:

>100_bases
TTCCGGCATTTTTGTGTAGCCTTACACGCGTCATGACAACACCGTTGAGCTCGCAACCTATATCCACGTCTAGGCGATCC
CTGGTCGTCGGCCTGGCTCT

Product: copper resistance D domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MADDWLNIALRFALYVDLTILFGVSLFGAYALRPDHRSSAIARRYVCAIGVAAASGIVLSLWSIVVTAKAMTGAAKYAEL
TSHVFGMMLSSTAVGIGWMVRIAALAACLIIAMCVRRRQTLPFSIFAVLGAVALATVAWAGHGAMDDGSRGYVHITADIA
HLLAAGAWVGSLTAFVLLARTPQAASLESVEILNHTSNGFARLGTLIVATLLATGVVNYLLIVGPTIDGLATSAYGVLLL
AKLAMFGLMLGLASANRYLLSPQLEIAMRSGDHAGAVMTLRRSLITEASLAVIILALVAWLGVLSPPGT

Sequences:

>Translated_309_residues
MADDWLNIALRFALYVDLTILFGVSLFGAYALRPDHRSSAIARRYVCAIGVAAASGIVLSLWSIVVTAKAMTGAAKYAEL
TSHVFGMMLSSTAVGIGWMVRIAALAACLIIAMCVRRRQTLPFSIFAVLGAVALATVAWAGHGAMDDGSRGYVHITADIA
HLLAAGAWVGSLTAFVLLARTPQAASLESVEILNHTSNGFARLGTLIVATLLATGVVNYLLIVGPTIDGLATSAYGVLLL
AKLAMFGLMLGLASANRYLLSPQLEIAMRSGDHAGAVMTLRRSLITEASLAVIILALVAWLGVLSPPGT
>Mature_308_residues
ADDWLNIALRFALYVDLTILFGVSLFGAYALRPDHRSSAIARRYVCAIGVAAASGIVLSLWSIVVTAKAMTGAAKYAELT
SHVFGMMLSSTAVGIGWMVRIAALAACLIIAMCVRRRQTLPFSIFAVLGAVALATVAWAGHGAMDDGSRGYVHITADIAH
LLAAGAWVGSLTAFVLLARTPQAASLESVEILNHTSNGFARLGTLIVATLLATGVVNYLLIVGPTIDGLATSAYGVLLLA
KLAMFGLMLGLASANRYLLSPQLEIAMRSGDHAGAVMTLRRSLITEASLAVIILALVAWLGVLSPPGT

Specific function: Exact function not known. Involved in copper resistance. Appears to be involved in copper uptake in conjunction with CopC [H]

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopD family [H]

Homologues:

Organism=Escherichia coli, GI1788145, Length=302, Percent_Identity=26.4900662251656, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008457 [H]

Pfam domain/function: PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 32265; Mature: 32133

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDWLNIALRFALYVDLTILFGVSLFGAYALRPDHRSSAIARRYVCAIGVAAASGIVLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LWSIVVTAKAMTGAAKYAELTSHVFGMMLSSTAVGIGWMVRIAALAACLIIAMCVRRRQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LPFSIFAVLGAVALATVAWAGHGAMDDGSRGYVHITADIAHLLAAGAWVGSLTAFVLLAR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHC
TPQAASLESVEILNHTSNGFARLGTLIVATLLATGVVNYLLIVGPTIDGLATSAYGVLLL
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AKLAMFGLMLGLASANRYLLSPQLEIAMRSGDHAGAVMTLRRSLITEASLAVIILALVAW
HHHHHHHHHHHHHHCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVLSPPGT
HHCCCCCCC
>Mature Secondary Structure 
ADDWLNIALRFALYVDLTILFGVSLFGAYALRPDHRSSAIARRYVCAIGVAAASGIVLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LWSIVVTAKAMTGAAKYAELTSHVFGMMLSSTAVGIGWMVRIAALAACLIIAMCVRRRQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LPFSIFAVLGAVALATVAWAGHGAMDDGSRGYVHITADIAHLLAAGAWVGSLTAFVLLAR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHC
TPQAASLESVEILNHTSNGFARLGTLIVATLLATGVVNYLLIVGPTIDGLATSAYGVLLL
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AKLAMFGLMLGLASANRYLLSPQLEIAMRSGDHAGAVMTLRRSLITEASLAVIILALVAW
HHHHHHHHHHHHHHCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVLSPPGT
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3372485; 8449873 [H]