Click here to switch to the map view.

The map label for this gene is 187928830

Identifier: 187928830

GI number: 187928830

Start: 1842924

End: 1843487

Strand: Reverse

Name: 187928830

Synonym: Rpic_1747

Alternate gene names: NA

Gene position: 1843487-1842924 (Counterclockwise)

Preceding gene: 187928831

Following gene: 187928829

Centisome position: 46.76

GC content: 55.32

Gene sequence:

>564_bases
ATGAACAAACTTCTTCAAGCTATACACGAAAGCTTGCCGCAGTGGCTGGCAGATTGGTTCGACATTCTTGTTCCCGCTAT
CGAGGTCGTGCTGATTGCGGCTGGCGCATGGTTAGCAGTGCGCATCGCGCGGCGGTTGCTTAGAAAGCTGACCAATACAT
ATTCTCTGCCAGGAAAAGTTGCGGCGCTGTCTTTGCGTGTGGTCGCGACCATCGTGTACGTAGCTGCCACGCTCTGGGCT
CTGGAGCGAATGGGCGTGTCTGGAACCGTCCTGTGGACCGCATTCACGGGATTTGCCACTGTCGGGGCGGTCGCGTTTTT
CGCCGCGTGGAGTGTACTCTCGAACCTGTTCTGCGCGCTCCTGATATACGTCACCGGTGCGTTCCGCATTGGGGATGTTG
TGGAGCTTCTTGAGAACGGGGAAAAGCCGGGAATTAAGGGCCGTGTGCTCGACGTAAATCTCGTCTATACCACCTTACTG
GAAACAACAGTCGAAGGACAAGAGGTGGTGCTGCAGCTGCCGAACAGTCTGGTGTTTCAACGTGTGCTACGAAGGTGGAA
GTAA

Upstream 100 bases:

>100_bases
AAGTTGTCGCGCTTGACCTTCAAGCAAAGACCGGAACGGTAAAAATCCGATTATTGGTATCTGTGCCACAGTACGGTGCT
GTGGCTGTATCTCTATTTCG

Downstream 100 bases:

>100_bases
CCGCAAGGGTGGCGCGGTCAGGCAAGGACGGAGACCGGCGCAAGAAGGGAAGCCCCGCTTCGCTTTTTTGAGGCCGAGCA
AACTACTCAAGACCTTAAGC

Product: small-conductance mechanosensitive channel-like protein

Products: NA

Alternate protein names: Transmembrane Protein; Small-Conductance Mechanosensitive Channel Protein; Small-Conductance Mechanosensitive Channel

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNKLLQAIHESLPQWLADWFDILVPAIEVVLIAAGAWLAVRIARRLLRKLTNTYSLPGKVAALSLRVVATIVYVAATLWA
LERMGVSGTVLWTAFTGFATVGAVAFFAAWSVLSNLFCALLIYVTGAFRIGDVVELLENGEKPGIKGRVLDVNLVYTTLL
ETTVEGQEVVLQLPNSLVFQRVLRRWK

Sequences:

>Translated_187_residues
MNKLLQAIHESLPQWLADWFDILVPAIEVVLIAAGAWLAVRIARRLLRKLTNTYSLPGKVAALSLRVVATIVYVAATLWA
LERMGVSGTVLWTAFTGFATVGAVAFFAAWSVLSNLFCALLIYVTGAFRIGDVVELLENGEKPGIKGRVLDVNLVYTTLL
ETTVEGQEVVLQLPNSLVFQRVLRRWK
>Mature_187_residues
MNKLLQAIHESLPQWLADWFDILVPAIEVVLIAAGAWLAVRIARRLLRKLTNTYSLPGKVAALSLRVVATIVYVAATLWA
LERMGVSGTVLWTAFTGFATVGAVAFFAAWSVLSNLFCALLIYVTGAFRIGDVVELLENGEKPGIKGRVLDVNLVYTTLL
ETTVEGQEVVLQLPNSLVFQRVLRRWK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20639; Mature: 20639

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLLQAIHESLPQWLADWFDILVPAIEVVLIAAGAWLAVRIARRLLRKLTNTYSLPGKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
AALSLRVVATIVYVAATLWALERMGVSGTVLWTAFTGFATVGAVAFFAAWSVLSNLFCAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIYVTGAFRIGDVVELLENGEKPGIKGRVLDVNLVYTTLLETTVEGQEVVLQLPNSLVFQ
HHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHCCHHHHHH
RVLRRWK
HHHHHCC
>Mature Secondary Structure
MNKLLQAIHESLPQWLADWFDILVPAIEVVLIAAGAWLAVRIARRLLRKLTNTYSLPGKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
AALSLRVVATIVYVAATLWALERMGVSGTVLWTAFTGFATVGAVAFFAAWSVLSNLFCAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIYVTGAFRIGDVVELLENGEKPGIKGRVLDVNLVYTTLLETTVEGQEVVLQLPNSLVFQ
HHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHCCHHHHHH
RVLRRWK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA