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The map label for this gene is xerD [H]

Identifier: 187928829

GI number: 187928829

Start: 1840991

End: 1842319

Strand: Reverse

Name: xerD [H]

Synonym: Rpic_1746

Alternate gene names: 187928829

Gene position: 1842319-1840991 (Counterclockwise)

Preceding gene: 187928830

Following gene: 187928827

Centisome position: 46.73

GC content: 68.1

Gene sequence:

>1329_bases
GTGCGCGCATTGCGAGCCCACGGCATTTCCACACTGGCGGACCTGACCGTGCGCGTGCCGCGCCGGCGCCGCTGGTGGGG
CGCGATCCCGGGGCTGGGGCAAGCGAGCGCGCGGCACATCGAGGCCTTCTTCCACGCCCATCCGCGGTTGACGGAGCGTG
CGCGTGCCCTGATCGTCGGCGCGCCGCCAGGCGAGGTGGTCCCGTGGGAGCGGCTGAAACTGCCCGACGAGGTGGACGGC
TCGCGAGGCAGCTTCCGGGCACCGCGACAGGCCTGCACGCTCGACGCATCGAACGACTACGAAGCCGTGCAGGCCTGGCT
CGCCCTGCACGAAACCCAGACCACGCAGCGCGCCTATCGCAAGGAGGCGGAACGCCTGATCCTGTGGGCGATTATCGAGC
GCGGTCGGGCGCTGTCGTCGCTTACGACCGAGGACGCCATCGCCTACCGCGGGTTCCTGCGGCGACCAACTCCGCGTGAG
CGCTGGATCGGGCCACCGCGGGCACGCAGCGCGCCCGACTGGCGCCCCTTCGCACGGGGGCTATCGGCACGTTCGACGGC
CTACGCCCTCACGGTGCTGGGCGCCATGTTCCGATGGCTGATCGAGCAGCGCTATGTATTGGCCAACCCGTTTGCCGGCA
TCAAAGTCCGCGGCCGCACGCGGGTCGCGCCACTCGATACCACACGTGGCTTTACTGAGGGCGAATGGCTGCTGGTGCGC
ACCATTGCCGATGGCCTGGAATGGTCGTACGGGTGGGACGTGCCCGCAGCGCAGCGCTTGCGCTTCATTCTCGATTTTGC
CTACGCGACCGGCCTGCGGGCCAGCGAACTGGTTGGCGCGACGCTGGGCGATATCCGCACTGACGAGCGCAACGACCGCT
GGCTGCACCTGGTCGGCAAAGGTGGGCGCCCGGGAAAGGTGGCGCTACCGCCACTTGCGCGAACCGCACTCGATCAGCAT
CTTGTACAGCGCGGACTGCCGGTGACACCAGCCCGTTGGGACCCCAGGACACCCTTGATCGCCAGCCTGGAGCAGGACAG
CGTCACTAACATCACCGGCACCCGGCTGTGGATGGTAATGCGGCGCTTCTTTGGCCAGGCCGCGGACATCATCGCCGGCG
ACCACCCGACACTCGCCGAAAAGCTGCGCCGAGCCAGTCCCCACTGGACGCGGCATACCCACGCTACACACGCCCTCGCT
CGCGGCGCGGAACTGACCACCGTGCGCGATAACCTACGCCACGCGTCGGTGGCCACCACCTCGATTTACTTGCAAAGCGA
CGAAGTCAAGCGGGCACACCAAATAGGTCAGGCCTTTGCCGCTCGGTAG

Upstream 100 bases:

>100_bases
TGGCCTCGCCGATGGCCAGGCCATCAGGGTTCTGCGTGCTCTGCCTGCGCCGCAGCCACAGGTCACCGACGACATTGAAC
TGTGGCTGGCACCGCGGGCC

Downstream 100 bases:

>100_bases
CCGACGTCCGTGCCGACTGGCTTAGCGTGCAATATTTTCCGTTTTCTGAAGCGACCCCAGGTACAGCGAACTCCAACGGC
TCTGCGCGCCGATGATCTGA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MRALRAHGISTLADLTVRVPRRRRWWGAIPGLGQASARHIEAFFHAHPRLTERARALIVGAPPGEVVPWERLKLPDEVDG
SRGSFRAPRQACTLDASNDYEAVQAWLALHETQTTQRAYRKEAERLILWAIIERGRALSSLTTEDAIAYRGFLRRPTPRE
RWIGPPRARSAPDWRPFARGLSARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAPLDTTRGFTEGEWLLVR
TIADGLEWSYGWDVPAAQRLRFILDFAYATGLRASELVGATLGDIRTDERNDRWLHLVGKGGRPGKVALPPLARTALDQH
LVQRGLPVTPARWDPRTPLIASLEQDSVTNITGTRLWMVMRRFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALA
RGAELTTVRDNLRHASVATTSIYLQSDEVKRAHQIGQAFAAR

Sequences:

>Translated_442_residues
MRALRAHGISTLADLTVRVPRRRRWWGAIPGLGQASARHIEAFFHAHPRLTERARALIVGAPPGEVVPWERLKLPDEVDG
SRGSFRAPRQACTLDASNDYEAVQAWLALHETQTTQRAYRKEAERLILWAIIERGRALSSLTTEDAIAYRGFLRRPTPRE
RWIGPPRARSAPDWRPFARGLSARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAPLDTTRGFTEGEWLLVR
TIADGLEWSYGWDVPAAQRLRFILDFAYATGLRASELVGATLGDIRTDERNDRWLHLVGKGGRPGKVALPPLARTALDQH
LVQRGLPVTPARWDPRTPLIASLEQDSVTNITGTRLWMVMRRFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALA
RGAELTTVRDNLRHASVATTSIYLQSDEVKRAHQIGQAFAAR
>Mature_442_residues
MRALRAHGISTLADLTVRVPRRRRWWGAIPGLGQASARHIEAFFHAHPRLTERARALIVGAPPGEVVPWERLKLPDEVDG
SRGSFRAPRQACTLDASNDYEAVQAWLALHETQTTQRAYRKEAERLILWAIIERGRALSSLTTEDAIAYRGFLRRPTPRE
RWIGPPRARSAPDWRPFARGLSARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAPLDTTRGFTEGEWLLVR
TIADGLEWSYGWDVPAAQRLRFILDFAYATGLRASELVGATLGDIRTDERNDRWLHLVGKGGRPGKVALPPLARTALDQH
LVQRGLPVTPARWDPRTPLIASLEQDSVTNITGTRLWMVMRRFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALA
RGAELTTVRDNLRHASVATTSIYLQSDEVKRAHQIGQAFAAR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49681; Mature: 49681

Theoretical pI: Translated: 11.64; Mature: 11.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALRAHGISTLADLTVRVPRRRRWWGAIPGLGQASARHIEAFFHAHPRLTERARALIVG
CCCHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCEEEEE
APPGEVVPWERLKLPDEVDGSRGSFRAPRQACTLDASNDYEAVQAWLALHETQTTQRAYR
CCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
KEAERLILWAIIERGRALSSLTTEDAIAYRGFLRRPTPRERWIGPPRARSAPDWRPFARG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHC
LSARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAPLDTTRGFTEGEWLLVR
CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCEEECCCCCCCCCCCCCEEEEE
TIADGLEWSYGWDVPAAQRLRFILDFAYATGLRASELVGATLGDIRTDERNDRWLHLVGK
EHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEC
GGRPGKVALPPLARTALDQHLVQRGLPVTPARWDPRTPLIASLEQDSVTNITGTRLWMVM
CCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEECCCCCCCCCCHHHHHHHH
RRFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALARGAELTTVRDNLRHASVATT
HHHHCCHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEEE
SIYLQSDEVKRAHQIGQAFAAR
EEEEECHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRALRAHGISTLADLTVRVPRRRRWWGAIPGLGQASARHIEAFFHAHPRLTERARALIVG
CCCHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCEEEEE
APPGEVVPWERLKLPDEVDGSRGSFRAPRQACTLDASNDYEAVQAWLALHETQTTQRAYR
CCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
KEAERLILWAIIERGRALSSLTTEDAIAYRGFLRRPTPRERWIGPPRARSAPDWRPFARG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHC
LSARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAPLDTTRGFTEGEWLLVR
CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCEEECCCCCCCCCCCCCEEEEE
TIADGLEWSYGWDVPAAQRLRFILDFAYATGLRASELVGATLGDIRTDERNDRWLHLVGK
EHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEC
GGRPGKVALPPLARTALDQHLVQRGLPVTPARWDPRTPLIASLEQDSVTNITGTRLWMVM
CCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEECCCCCCCCCCHHHHHHHH
RRFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALARGAELTTVRDNLRHASVATT
HHHHCCHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEEE
SIYLQSDEVKRAHQIGQAFAAR
EEEEECHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]