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The map label for this gene is ycdC [C]

Identifier: 187927744

GI number: 187927744

Start: 687782

End: 688525

Strand: Reverse

Name: ycdC [C]

Synonym: Rpic_0648

Alternate gene names: 187927744

Gene position: 688525-687782 (Counterclockwise)

Preceding gene: 187927749

Following gene: 187927743

Centisome position: 17.46

GC content: 64.78

Gene sequence:

>744_bases
GTGACTGATCAAGATTCCGAGTCTTCCTCCAAACGTTGGACGCGCCGCAAAGAGGCCCGCCCGCAAGAACTGGTCGCCGC
CGCGCTGAACCTGTTCGTGGCGCGCGGCTACGCGGCCACGCGGCTGGAAGACGTGGCCTCGGCCGCCGGCGTATCCAAGG
GCACGGTCTACCTGTATTTCGCCAACAAGGAAGAACTGTTCAAGGCTGTGGTGCAGGAAAACCTGGTGCCCGCGCTGGCC
GAGGGCGAGGCCCTGATCGACAGTTTTGACGGCACCAGCGAAGCGCTGCTGCACGAGATCCTGATGGGCTGGTGGGAGCT
CATCGGCGAATCGCCGGCTTCGGGCCTCACCAAGCTGCTGATGGCCGAGTCGGGCAACTTTCCTGACCTGGCGCAGTACT
ACCACGAAGAAGTCATCGAGCGCTGCGACCGCCTGTTCGCGCGCATCCTCGAACGCGGCATGGCCCGCGGCGAATTCCGC
GACGTCAACATCGATCTCACCACGCTGACCATGGTCGCGCCGATGATCTTCCTGATGATGTGGAAGCACTCGTTCGGCCC
GTGCTCGCACCGGGAGCTGGAACCGAAGGCGTTCATCACCCACGTCGTGTCGCTGCTGCTGCACGGCGTGCTGCGCAATC
CAGCGACGGGCGCAGTGATACCGCCTCCACCTGCCCTCACAGTGCAGCCGTGGCGCACGCTCCCGGAGCGGGCCAACAAC
CCCGACGAAGGCGCCTCGTCATGA

Upstream 100 bases:

>100_bases
AAGCCGCTTGACCCGCCCTTGCCGCATGCGTACATTAATGACCGAAAAGTAAGTTATCTGTGAGTCAGTGACCTCGTGTG
CTGGCTGACACCCTACCGCC

Downstream 100 bases:

>100_bases
CAACGTCTGCCGGAATGTCTTCCGGACTTGCTAAAATGCCGGGTTTGTCGTCAAACCCTCATTCGCATCACTCGCTCCGC
GTGGAAGGCATGCCCATGGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; Transcription Regulator TetR Family; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulatory Protein; Regulatory Protein Tetr; Transcription Regulator Protein; TetR Family Transcription Regulator Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTDQDSESSSKRWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVVQENLVPALA
EGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESGNFPDLAQYYHEEVIERCDRLFARILERGMARGEFR
DVNIDLTTLTMVAPMIFLMMWKHSFGPCSHRELEPKAFITHVVSLLLHGVLRNPATGAVIPPPPALTVQPWRTLPERANN
PDEGASS

Sequences:

>Translated_247_residues
MTDQDSESSSKRWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVVQENLVPALA
EGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESGNFPDLAQYYHEEVIERCDRLFARILERGMARGEFR
DVNIDLTTLTMVAPMIFLMMWKHSFGPCSHRELEPKAFITHVVSLLLHGVLRNPATGAVIPPPPALTVQPWRTLPERANN
PDEGASS
>Mature_246_residues
TDQDSESSSKRWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVVQENLVPALAE
GEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESGNFPDLAQYYHEEVIERCDRLFARILERGMARGEFRD
VNIDLTTLTMVAPMIFLMMWKHSFGPCSHRELEPKAFITHVVSLLLHGVLRNPATGAVIPPPPALTVQPWRTLPERANNP
DEGASS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27411; Mature: 27279

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQDSESSSKRWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYF
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEE
ANKEELFKAVVQENLVPALAEGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLL
CCHHHHHHHHHHHHCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
MAESGNFPDLAQYYHEEVIERCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMM
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHH
WKHSFGPCSHRELEPKAFITHVVSLLLHGVLRNPATGAVIPPPPALTVQPWRTLPERANN
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
PDEGASS
CCCCCCC
>Mature Secondary Structure 
TDQDSESSSKRWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYF
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEE
ANKEELFKAVVQENLVPALAEGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLL
CCHHHHHHHHHHHHCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
MAESGNFPDLAQYYHEEVIERCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMM
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHH
WKHSFGPCSHRELEPKAFITHVVSLLLHGVLRNPATGAVIPPPPALTVQPWRTLPERANN
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
PDEGASS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA