Click here to switch to the map view.

The map label for this gene is hofB [C]

Identifier: 187927684

GI number: 187927684

Start: 622317

End: 623681

Strand: Reverse

Name: hofB [C]

Synonym: Rpic_0588

Alternate gene names: 187927684

Gene position: 623681-622317 (Counterclockwise)

Preceding gene: 187927685

Following gene: 187927683

Centisome position: 15.82

GC content: 61.17

Gene sequence:

>1365_bases
ATGTCGATCCGCGAACAACTCTCCCGCCCGGAACACGGGCCGCTGTCCATGAACGGACACGCACCGCACCACCACAATGT
GGCGGGCCATCCCGCCTACCGGGACTTCAAGAAAACCGTGCACGAAGTGGTGCTCGACCGCGTGGATCTGGAACGGCTGG
CCCGCTTCCCGATCGAGCAGGTGCGCCACGAGATCGGCACCCTGGTCAACAACATCATCGACGAAGAAAAGCTGCTGCTC
AATGACACCGAGCGTCGGCAGATGACCACTGATGTGTATGACGAGATGTTTGGCTTCGGCCCGCTCGAGCCTCTGCTGCA
GGACCCGACGGTGTCTGACATCCTGGTCAACACGGCCAAGCAGGTCTACGTTGAACGCCGCGGCAAGCTGGAGCTTACCG
ACGTCACCTTCTACGACGATGCACACCTGATGAAGGTGATTGAGAAGATCGTCTCGCGCGTGGGGCGTCGCATTGATGAA
ACCAGCCCGATGGTGGACGCGCGCCTGCCCGATGGCTCGCGGGTGAACGCCATTATTCCGCCCTCGGCCATCGATGGCCC
GCTGCTCTCGATCCGCCGGTTTGCGACCAACCCGCTGCAGGTGTCGGACCTAATCGATCTCAAAACACTCACACCGCCCA
TGGCCAAGCTGATGCAAGCCTTGTCGCAAGCCAAGGTGAACGTGTTGGTATCGGGCGGCACGGGCAGCGGCAAAACCACA
CTCCTGAACATCCTCTCGGGCTTCATCCCGGCAGACGAGCGGATGGTCACCATCGAAGATGCCGCAGAACTGCAACTGCG
CCAACCGCACGTGCTGCGCTTGGAAACGCGCCCGCCCAACATCGAGGGTAAAGGCGAGATCACGCAGCGTGCACTGGTGC
GCAACGCCCTGCGCATGCGGCCAGACCGCATCCTCCTGGGCGAAGTGCGCGGCGGCGAGGCCCTGGACATGCTCAACGCC
ATGAATACCGGTCACGAAGGGTCACTCACCACCGTGCACGCCAACACCCCGCGCGATGCACTGACGCGCATGGAAAACAT
GGTGAACATGGCAGGCCTGAACCTGCCACCCAAGACGATCCGGCAGCAGATCGCCTCGGCCATCACCGTGATCATTCAAG
TGGCGCGTTTGACGGATGGGCGCCGCAAAGTCATCAGCATCCAGGAGATCACCGGCATGGAAGGCGATGTCATCAACATG
CAGGAAATTTTCACCTTCCAGCGCACGGGCATCGCGCAAGACGGCTCCGTCAAGGGGCACTTCCGCGCCACAGGTGTCTA
TCCGAAATTTGCCGAAAGACTGCGCGTGTTCGGGGTGGGCTTGCCAGACGAGACCTTTGACCCGCAAAGGCACTTTGAGG
TTTAA

Upstream 100 bases:

>100_bases
AGGTTTCTCCTTGAGCAAGTTCTTCTCGCGGGCCAAGACGTCGTCTCCGAACATTGCCTGAGTTTCTCCTGTCCATTTCG
CCAGTCAGACGGAGCCCATC

Downstream 100 bases:

>100_bases
AGGCTTGAAGCCAGAGCCACCACCAGTGTGGTCCAAGCGCGATCTAGAAACGGGGGCACCCTAAATGAACGAAATCTTCT
ACGCGTTCGCAATCCTGCTG

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MSIREQLSRPEHGPLSMNGHAPHHHNVAGHPAYRDFKKTVHEVVLDRVDLERLARFPIEQVRHEIGTLVNNIIDEEKLLL
NDTERRQMTTDVYDEMFGFGPLEPLLQDPTVSDILVNTAKQVYVERRGKLELTDVTFYDDAHLMKVIEKIVSRVGRRIDE
TSPMVDARLPDGSRVNAIIPPSAIDGPLLSIRRFATNPLQVSDLIDLKTLTPPMAKLMQALSQAKVNVLVSGGTGSGKTT
LLNILSGFIPADERMVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMRPDRILLGEVRGGEALDMLNA
MNTGHEGSLTTVHANTPRDALTRMENMVNMAGLNLPPKTIRQQIASAITVIIQVARLTDGRRKVISIQEITGMEGDVINM
QEIFTFQRTGIAQDGSVKGHFRATGVYPKFAERLRVFGVGLPDETFDPQRHFEV

Sequences:

>Translated_454_residues
MSIREQLSRPEHGPLSMNGHAPHHHNVAGHPAYRDFKKTVHEVVLDRVDLERLARFPIEQVRHEIGTLVNNIIDEEKLLL
NDTERRQMTTDVYDEMFGFGPLEPLLQDPTVSDILVNTAKQVYVERRGKLELTDVTFYDDAHLMKVIEKIVSRVGRRIDE
TSPMVDARLPDGSRVNAIIPPSAIDGPLLSIRRFATNPLQVSDLIDLKTLTPPMAKLMQALSQAKVNVLVSGGTGSGKTT
LLNILSGFIPADERMVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMRPDRILLGEVRGGEALDMLNA
MNTGHEGSLTTVHANTPRDALTRMENMVNMAGLNLPPKTIRQQIASAITVIIQVARLTDGRRKVISIQEITGMEGDVINM
QEIFTFQRTGIAQDGSVKGHFRATGVYPKFAERLRVFGVGLPDETFDPQRHFEV
>Mature_453_residues
SIREQLSRPEHGPLSMNGHAPHHHNVAGHPAYRDFKKTVHEVVLDRVDLERLARFPIEQVRHEIGTLVNNIIDEEKLLLN
DTERRQMTTDVYDEMFGFGPLEPLLQDPTVSDILVNTAKQVYVERRGKLELTDVTFYDDAHLMKVIEKIVSRVGRRIDET
SPMVDARLPDGSRVNAIIPPSAIDGPLLSIRRFATNPLQVSDLIDLKTLTPPMAKLMQALSQAKVNVLVSGGTGSGKTTL
LNILSGFIPADERMVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMRPDRILLGEVRGGEALDMLNAM
NTGHEGSLTTVHANTPRDALTRMENMVNMAGLNLPPKTIRQQIASAITVIIQVARLTDGRRKVISIQEITGMEGDVINMQ
EIFTFQRTGIAQDGSVKGHFRATGVYPKFAERLRVFGVGLPDETFDPQRHFEV

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=178, Percent_Identity=32.0224719101124, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 50708; Mature: 50577

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIREQLSRPEHGPLSMNGHAPHHHNVAGHPAYRDFKKTVHEVVLDRVDLERLARFPIEQ
CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCHHH
VRHEIGTLVNNIIDEEKLLLNDTERRQMTTDVYDEMFGFGPLEPLLQDPTVSDILVNTAK
HHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHH
QVYVERRGKLELTDVTFYDDAHLMKVIEKIVSRVGRRIDETSPMVDARLPDGSRVNAIIP
HHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEC
PSAIDGPLLSIRRFATNPLQVSDLIDLKTLTPPMAKLMQALSQAKVNVLVSGGTGSGKTT
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCHHH
LLNILSGFIPADERMVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMR
HHHHHHHCCCCCCCEEEECCHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
PDRILLGEVRGGEALDMLNAMNTGHEGSLTTVHANTPRDALTRMENMVNMAGLNLPPKTI
CCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHH
RQQIASAITVIIQVARLTDGRRKVISIQEITGMEGDVINMQEIFTFQRTGIAQDGSVKGH
HHHHHHHHHHHHHHHHHCCCCHHEEEHHHHCCCCCCEECHHHHHHHHHCCCCCCCCCCCE
FRATGVYPKFAERLRVFGVGLPDETFDPQRHFEV
EEECCCCHHHHHHHHHHCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
SIREQLSRPEHGPLSMNGHAPHHHNVAGHPAYRDFKKTVHEVVLDRVDLERLARFPIEQ
CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCHHH
VRHEIGTLVNNIIDEEKLLLNDTERRQMTTDVYDEMFGFGPLEPLLQDPTVSDILVNTAK
HHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHH
QVYVERRGKLELTDVTFYDDAHLMKVIEKIVSRVGRRIDETSPMVDARLPDGSRVNAIIP
HHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEC
PSAIDGPLLSIRRFATNPLQVSDLIDLKTLTPPMAKLMQALSQAKVNVLVSGGTGSGKTT
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCCCHHH
LLNILSGFIPADERMVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMR
HHHHHHHCCCCCCCEEEECCHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
PDRILLGEVRGGEALDMLNAMNTGHEGSLTTVHANTPRDALTRMENMVNMAGLNLPPKTI
CCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHH
RQQIASAITVIIQVARLTDGRRKVISIQEITGMEGDVINMQEIFTFQRTGIAQDGSVKGH
HHHHHHHHHHHHHHHHHCCCCHHEEEHHHHCCCCCCEECHHHHHHHHHCCCCCCCCCCCE
FRATGVYPKFAERLRVFGVGLPDETFDPQRHFEV
EEECCCCHHHHHHHHHHCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]