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The map label for this gene is dapA [H]

Identifier: 187927663

GI number: 187927663

Start: 601556

End: 602452

Strand: Reverse

Name: dapA [H]

Synonym: Rpic_0566

Alternate gene names: 187927663

Gene position: 602452-601556 (Counterclockwise)

Preceding gene: 187927664

Following gene: 187927662

Centisome position: 15.28

GC content: 65.33

Gene sequence:

>897_bases
ATGACCGCGTCGTTCAAAGGGATCGTCCCTGCCCTGATCACCCCGATGACCCCGACGGAAGACGTGGACGAAAACGGCCT
GCGCGTGCTGATCGATCGGCTGATCGACGCGGGCGTCCACGGGCTCTTCGTGCTCGGCACCAACGGCGAATTCATTGCGC
TGAGCGAAGAAGAGAAGCTGCGCATCGCCCGTATTACCGTCGAGCAGGCGCGCGGCCGCGTGCCCGTGGTGGCGGGCACC
GGCGCCTATGCCACGCGTGATGTGATCGCGCTCAACCACAAGATGCAAGACGTGGGTGTGGACGCCGTATCCGTCATCAC
GCCCTACTTCAACGGCGCCACGCAGCCGGAGCTGTTTGCGCATTACGAGCAGATCGCGCGCGCGACGTCGCTGCCGATCC
TGCTGTACACGATTCCGGCCAAGGCCGGCGTGACGCTGACCGTCGACACCGTGCGCCGGCTGGCGGACATCCCGAACATC
CGCGCCATCAAGGACAGTGGTGGCGATTTCGACCGCCTGCTGCAGCTCATCAACCTGCGCCGTGACGACTTTGCCGTGTT
CACCGGCACCGATTCGATGATCCTCTGGACACTGATTGCCGGTGGCGACGGCGCGGTGGCAGCCACCACCAATGCGGTGC
CGCACGTGGTCATGTCGATCTGGAATCAATTCCAGGCGGGCAACATTCCGGCCGCGCGTGCTGCACAGGAATCGCTGCGT
GCACTGCGTGACGCGTTTGCGCTCGGCACCATGCCCGTAGTGCTGAAGACCGCCGCCGAGATGCTCGGCATGCCCGCAGG
GCCGGCACGCTCGCCGGCCAAGCCGCTCGATGAGAAAAGCCGCGAACGCCTGGCTGAAGCGCTCGCCATCTACCGTGCCG
CGCTGAACGTCGCCTAA

Upstream 100 bases:

>100_bases
TTACAATGACTGGACCGATCGATGTTTGAGGCATTCAGCCGTGCATCCCTCCGGTTCAAGCTGACCCACGGGCCGCAGCC
CACCACGAAAGGATTGCCAC

Downstream 100 bases:

>100_bases
GCACTGCCGCCCGCCCCAACATCATCGATCGCCATGTCCTCCACCTACCATTTCCAGACCGTCAAGCACATCGTCCACGG
CGCAGGCAGTCTGGCATTGC

Product: dihydrodipicolinate synthase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTASFKGIVPALITPMTPTEDVDENGLRVLIDRLIDAGVHGLFVLGTNGEFIALSEEEKLRIARITVEQARGRVPVVAGT
GAYATRDVIALNHKMQDVGVDAVSVITPYFNGATQPELFAHYEQIARATSLPILLYTIPAKAGVTLTVDTVRRLADIPNI
RAIKDSGGDFDRLLQLINLRRDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNQFQAGNIPAARAAQESLR
ALRDAFALGTMPVVLKTAAEMLGMPAGPARSPAKPLDEKSRERLAEALAIYRAALNVA

Sequences:

>Translated_298_residues
MTASFKGIVPALITPMTPTEDVDENGLRVLIDRLIDAGVHGLFVLGTNGEFIALSEEEKLRIARITVEQARGRVPVVAGT
GAYATRDVIALNHKMQDVGVDAVSVITPYFNGATQPELFAHYEQIARATSLPILLYTIPAKAGVTLTVDTVRRLADIPNI
RAIKDSGGDFDRLLQLINLRRDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNQFQAGNIPAARAAQESLR
ALRDAFALGTMPVVLKTAAEMLGMPAGPARSPAKPLDEKSRERLAEALAIYRAALNVA
>Mature_297_residues
TASFKGIVPALITPMTPTEDVDENGLRVLIDRLIDAGVHGLFVLGTNGEFIALSEEEKLRIARITVEQARGRVPVVAGTG
AYATRDVIALNHKMQDVGVDAVSVITPYFNGATQPELFAHYEQIARATSLPILLYTIPAKAGVTLTVDTVRRLADIPNIR
AIKDSGGDFDRLLQLINLRRDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNQFQAGNIPAARAAQESLRA
LRDAFALGTMPVVLKTAAEMLGMPAGPARSPAKPLDEKSRERLAEALAIYRAALNVA

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=282, Percent_Identity=31.2056737588652, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI13540533, Length=287, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1786463, Length=286, Percent_Identity=36.3636363636364, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1788823, Length=285, Percent_Identity=32.9824561403509, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI87082415, Length=284, Percent_Identity=33.0985915492958, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1789620, Length=283, Percent_Identity=30.7420494699647, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 31908; Mature: 31777

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASFKGIVPALITPMTPTEDVDENGLRVLIDRLIDAGVHGLFVLGTNGEFIALSEEEKL
CCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCE
RIARITVEQARGRVPVVAGTGAYATRDVIALNHKMQDVGVDAVSVITPYFNGATQPELFA
EEEEEEHHHHCCCEEEEECCCCCHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCHHHHH
HYEQIARATSLPILLYTIPAKAGVTLTVDTVRRLADIPNIRAIKDSGGDFDRLLQLINLR
HHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCC
RDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNQFQAGNIPAARAAQESLR
CCCEEEEECCCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALRDAFALGTMPVVLKTAAEMLGMPAGPARSPAKPLDEKSRERLAEALAIYRAALNVA
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TASFKGIVPALITPMTPTEDVDENGLRVLIDRLIDAGVHGLFVLGTNGEFIALSEEEKL
CCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCE
RIARITVEQARGRVPVVAGTGAYATRDVIALNHKMQDVGVDAVSVITPYFNGATQPELFA
EEEEEEHHHHCCCEEEEECCCCCHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCHHHHH
HYEQIARATSLPILLYTIPAKAGVTLTVDTVRRLADIPNIRAIKDSGGDFDRLLQLINLR
HHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCC
RDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNQFQAGNIPAARAAQESLR
CCCEEEEECCCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALRDAFALGTMPVVLKTAAEMLGMPAGPARSPAKPLDEKSRERLAEALAIYRAALNVA
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA