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The map label for this gene is ybeY [C]

Identifier: 187927509

GI number: 187927509

Start: 432904

End: 433716

Strand: Reverse

Name: ybeY [C]

Synonym: Rpic_0406

Alternate gene names: 187927509

Gene position: 433716-432904 (Counterclockwise)

Preceding gene: 187927510

Following gene: 187927508

Centisome position: 11.0

GC content: 61.5

Gene sequence:

>813_bases
GTGGCTAAAGCAAAAACCGATACCAAAGCAAAAACCAAGAAGACCCAACCCGCGGCCGCCGAGTCATTCGGCCCGCGCGT
CGACGTGTTCGACGCCCAGGGCAAACCCAGGACGGTGGATGCAAGCGCACTGCGCATTGCCTTTGCCGATGGCCGCAGCC
TGATCCTCGGTCTGCCGAATACCGTGGATGGGCCGATCACCCTCGTTGCCGAGCACGCCGACGCCGACATGCACGCCATG
CTCTCGCTGCGCCCCGAGCATCACGACAGCATCACGTTGCGCATTGAAACCCAGCCCGCCGAATTGGCAGACTCCACGGA
AGAAGCCTTCGACGACGACACCGCCGGCGCCGAAATGCTCACGCTCGACCTGACCGTGCAGTACGGCGATGAACTCAAGG
CTGCCGCTCGCAAGGCACTGCCGAAAGAACGCGACATCGAAGGGTGGATTGCCCCCGCACTGTTTGCCGATGCGCAGCTC
AACGTGCGCTTTGTCGGCGAAGAAGAAGGTCGCACGCTCAACCGCACCTACCGCGGCAAGGACTACGCGACCAACGTGCT
GACCTTCTCTTACGCAGAGAGCGCAGAAGACCCGGTCTCGGCCGACATCGTGCTGTGCTGCACGGTGGTCGAAAAGGAAG
CGAAGGAACAGAAGAAGCCGCTGCTCGCGCACTACGCACACCTGATCGTGCACGGCGCACTGCACGCCCAAGGCTACGAT
CACGAAGACGCGGCCGATGCAAAGGAAATGGAAGGCATCGAAACGGAAATCCTCCGCGACCTCGGTTTTGCCGATCCGTA
CGCAGATCGTTAA

Upstream 100 bases:

>100_bases
CACCAGCGTCGACGTGGTGCGGCACCCGCTGGTGGCCCGCATCGTCGAGGCCTATGACGAATTCCATGCCCAGCATAAAG
ATGCATAAGGACGCCTGAAC

Downstream 100 bases:

>100_bases
AGCGCCACGCGCTTGATGCTCAGACGCCGGCTTCGCGCCGGCGTTTTGCTTTCTCATGTTCCATTCTTGCAGCATGCAGT
TTCAACGGTGAATCAACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAKAKTDTKAKTKKTQPAAAESFGPRVDVFDAQGKPRTVDASALRIAFADGRSLILGLPNTVDGPITLVAEHADADMHAM
LSLRPEHHDSITLRIETQPAELADSTEEAFDDDTAGAEMLTLDLTVQYGDELKAAARKALPKERDIEGWIAPALFADAQL
NVRFVGEEEGRTLNRTYRGKDYATNVLTFSYAESAEDPVSADIVLCCTVVEKEAKEQKKPLLAHYAHLIVHGALHAQGYD
HEDAADAKEMEGIETEILRDLGFADPYADR

Sequences:

>Translated_270_residues
MAKAKTDTKAKTKKTQPAAAESFGPRVDVFDAQGKPRTVDASALRIAFADGRSLILGLPNTVDGPITLVAEHADADMHAM
LSLRPEHHDSITLRIETQPAELADSTEEAFDDDTAGAEMLTLDLTVQYGDELKAAARKALPKERDIEGWIAPALFADAQL
NVRFVGEEEGRTLNRTYRGKDYATNVLTFSYAESAEDPVSADIVLCCTVVEKEAKEQKKPLLAHYAHLIVHGALHAQGYD
HEDAADAKEMEGIETEILRDLGFADPYADR
>Mature_269_residues
AKAKTDTKAKTKKTQPAAAESFGPRVDVFDAQGKPRTVDASALRIAFADGRSLILGLPNTVDGPITLVAEHADADMHAML
SLRPEHHDSITLRIETQPAELADSTEEAFDDDTAGAEMLTLDLTVQYGDELKAAARKALPKERDIEGWIAPALFADAQLN
VRFVGEEEGRTLNRTYRGKDYATNVLTFSYAESAEDPVSADIVLCCTVVEKEAKEQKKPLLAHYAHLIVHGALHAQGYDH
EDAADAKEMEGIETEILRDLGFADPYADR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=142, Percent_Identity=44.3661971830986, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 29475; Mature: 29344

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKTDTKAKTKKTQPAAAESFGPRVDVFDAQGKPRTVDASALRIAFADGRSLILGLPN
CCCCCCCCCHHHCCCCCCHHHHCCCEEEEEECCCCCCEECCCEEEEEEECCCEEEEECCC
TVDGPITLVAEHADADMHAMLSLRPEHHDSITLRIETQPAELADSTEEAFDDDTAGAEML
CCCCCEEEEEECCCCCEEEHEEECCCCCCEEEEEEECCCHHHHCCHHHHCCCCCCCCEEE
TLDLTVQYGDELKAAARKALPKERDIEGWIAPALFADAQLNVRFVGEEEGRTLNRTYRGK
EEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCEECCEECCC
DYATNVLTFSYAESAEDPVSADIVLCCTVVEKEAKEQKKPLLAHYAHLIVHGALHAQGYD
CCEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
HEDAADAKEMEGIETEILRDLGFADPYADR
CCCCCCHHHHCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AKAKTDTKAKTKKTQPAAAESFGPRVDVFDAQGKPRTVDASALRIAFADGRSLILGLPN
CCCCCCCCHHHCCCCCCHHHHCCCEEEEEECCCCCCEECCCEEEEEEECCCEEEEECCC
TVDGPITLVAEHADADMHAMLSLRPEHHDSITLRIETQPAELADSTEEAFDDDTAGAEML
CCCCCEEEEEECCCCCEEEHEEECCCCCCEEEEEEECCCHHHHCCHHHHCCCCCCCCEEE
TLDLTVQYGDELKAAARKALPKERDIEGWIAPALFADAQLNVRFVGEEEGRTLNRTYRGK
EEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCEECCEECCC
DYATNVLTFSYAESAEDPVSADIVLCCTVVEKEAKEQKKPLLAHYAHLIVHGALHAQGYD
CCEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
HEDAADAKEMEGIETEILRDLGFADPYADR
CCCCCCHHHHCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]