Click here to switch to the map view.

The map label for this gene is olpB [H]

Identifier: 187927508

GI number: 187927508

Start: 431317

End: 432531

Strand: Reverse

Name: olpB [H]

Synonym: Rpic_0405

Alternate gene names: 187927508

Gene position: 432531-431317 (Counterclockwise)

Preceding gene: 187927509

Following gene: 187927507

Centisome position: 10.97

GC content: 68.89

Gene sequence:

>1215_bases
ATGCGTCAACGCTTCATGGACAGCATTCCGTGGACCACGCTGCTGGTTGGCGTGGGTGTCGGCACGGCGCTCGCGGTCAC
GCCGCGCATCGCACACGCTGATCACAAGCAATCGTGCTATGCGGGCATCGTCGTCGTATTTGACGGCGCGTGGCATCCGG
GCGCGGTGGTTGGCTGCCGCACGGTCAACATCTCCGACAGCAACAACGTGGTTGGCGCCGAGGTGAACCTCATGGTCGCG
CAAGGCACCATCCGGCCGCGCGTGCAGGCGGTGGTCGGCAGCACAAGCGTGCAGGCGCTCATCGGCGGCGGATACGACTT
TGCGAGCAGCAAGGCGCTGGTGGGCGTCGGAGCCACGGGCGACCACTGGCTCGCCGGCGTCGACATGGAAATCGCCGGAC
GTTGGACAGCCTACGGCGGCGCGAGCACGCTGGGCCGGTATCACAGCAATTCGCATCCCGCAGACCCGGCACCGGCGGCG
ACAACGCCGACTGGCAACAACGACGCACCGCCCCCCAGCGGCAACAACACGCCGCCGTCCAAGCCCAGCCCGACACCGGC
CCCCGCACCCGGTGCGTCGCCCAGCCCTGGCCCCACGCCGGCACCAACACCGAGCCCCGGGCCTAGCCCGTCGCCGACTC
CATCGCCTAGCCCGACTCCGAGCCCAACACCGACGCCCGCCCCGACGCCGACGCCGAGCCCATCGCCCGTCCCATCGCCG
TGCGGAAGTTGCCACGGAGGCGGCCACCACCACGGGCACGACCATGATCACGACCACGATCATGACCACAGCGGCGATCA
CGATCATGGCGGCGATCGCAACCACGGTGGCGACCACAATCATGGCGGCGACGGCAGCCACGGCGGCGATCATGATCACG
GCGGCGATGGCAACCACGATCACGGCGGCAACAGCAACCACGGTGGTGACCGCGATCATGGCGGCGGCGGCAACCACGGT
GGCCATCACGATCACGGCGGCGATGGTAACCACGGTGGCGATCACGATCATGGCGGCGGCGGCAACCACGGTGGCGATCA
TGATCATGGCGGCGATGGCAACCACGGCGGTGACCACCATCATGGCGGCGATGACAACCACGGTGGCGATCACGATCATG
GCGGCGATGGCAACCACGGTGGCGATCACGATCATGGCGGCGGCGGCACCCACGGCGGAGACCATGACCGCGGCGGCGAG
GGCGGGCACGACTGA

Upstream 100 bases:

>100_bases
GCATAAGCCGCCGCTCGAGCGCGCTTCACGAATTCGGCGCAAACGAGCGCCATCGGCCAGCCCGCGCACAGACGGGCAAG
GCCACCGCGGGGAGGTCATC

Downstream 100 bases:

>100_bases
CCGCTTCCCCCTCGGCAGATCGGCCGTCTTAACGCGCCCGAGCCCGGCCTCCAGATGTGAAATAAACCGCACTTCTGGAG
ACCTAGCAGCCACCCTGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Outer layer protein B; S-layer protein 1 [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MRQRFMDSIPWTTLLVGVGVGTALAVTPRIAHADHKQSCYAGIVVVFDGAWHPGAVVGCRTVNISDSNNVVGAEVNLMVA
QGTIRPRVQAVVGSTSVQALIGGGYDFASSKALVGVGATGDHWLAGVDMEIAGRWTAYGGASTLGRYHSNSHPADPAPAA
TTPTGNNDAPPPSGNNTPPSKPSPTPAPAPGASPSPGPTPAPTPSPGPSPSPTPSPSPTPSPTPTPAPTPTPSPSPVPSP
CGSCHGGGHHHGHDHDHDHDHDHSGDHDHGGDRNHGGDHNHGGDGSHGGDHDHGGDGNHDHGGNSNHGGDRDHGGGGNHG
GHHDHGGDGNHGGDHDHGGGGNHGGDHDHGGDGNHGGDHHHGGDDNHGGDHDHGGDGNHGGDHDHGGGGTHGGDHDRGGE
GGHD

Sequences:

>Translated_404_residues
MRQRFMDSIPWTTLLVGVGVGTALAVTPRIAHADHKQSCYAGIVVVFDGAWHPGAVVGCRTVNISDSNNVVGAEVNLMVA
QGTIRPRVQAVVGSTSVQALIGGGYDFASSKALVGVGATGDHWLAGVDMEIAGRWTAYGGASTLGRYHSNSHPADPAPAA
TTPTGNNDAPPPSGNNTPPSKPSPTPAPAPGASPSPGPTPAPTPSPGPSPSPTPSPSPTPSPTPTPAPTPTPSPSPVPSP
CGSCHGGGHHHGHDHDHDHDHDHSGDHDHGGDRNHGGDHNHGGDGSHGGDHDHGGDGNHDHGGNSNHGGDRDHGGGGNHG
GHHDHGGDGNHGGDHDHGGGGNHGGDHDHGGDGNHGGDHHHGGDDNHGGDHDHGGDGNHGGDHDHGGGGTHGGDHDRGGE
GGHD
>Mature_404_residues
MRQRFMDSIPWTTLLVGVGVGTALAVTPRIAHADHKQSCYAGIVVVFDGAWHPGAVVGCRTVNISDSNNVVGAEVNLMVA
QGTIRPRVQAVVGSTSVQALIGGGYDFASSKALVGVGATGDHWLAGVDMEIAGRWTAYGGASTLGRYHSNSHPADPAPAA
TTPTGNNDAPPPSGNNTPPSKPSPTPAPAPGASPSPGPTPAPTPSPGPSPSPTPSPSPTPSPTPTPAPTPTPSPSPVPSP
CGSCHGGGHHHGHDHDHDHDHDHSGDHDHGGDRNHGGDHNHGGDGSHGGDHDHGGDGNHDHGGNSNHGGDRDHGGGGNHG
GHHDHGGDGNHGGDHDHGGGGNHGGDHDHGGDGNHGGDHHHGGDDNHGGDHDHGGDGNHGGDHDHGGGGTHGGDHDRGGE
GGHD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall, S-layer [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 SLH (S-layer homology) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR002102
- InterPro:   IPR018452
- InterPro:   IPR001119 [H]

Pfam domain/function: PF00963 Cohesin; PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 40127; Mature: 40127

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQRFMDSIPWTTLLVGVGVGTALAVTPRIAHADHKQSCYAGIVVVFDGAWHPGAVVGCR
CCHHHHHHCCHHHHHHHHCCCCEEEECCHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEE
TVNISDSNNVVGAEVNLMVAQGTIRPRVQAVVGSTSVQALIGGGYDFASSKALVGVGATG
EEEECCCCCEEEEEEEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCC
DHWLAGVDMEIAGRWTAYGGASTLGRYHSNSHPADPAPAATTPTGNNDAPPPSGNNTPPS
CCEEECCCEEECCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KPSPTPAPAPGASPSPGPTPAPTPSPGPSPSPTPSPSPTPSPTPTPAPTPTPSPSPVPSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CGSCHGGGHHHGHDHDHDHDHDHSGDHDHGGDRNHGGDHNHGGDGSHGGDHDHGGDGNHD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGGNSNHGGDRDHGGGGNHGGHHDHGGDGNHGGDHDHGGGGNHGGDHDHGGDGNHGGDHH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGGDDNHGGDHDHGGDGNHGGDHDHGGGGTHGGDHDRGGEGGHD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRQRFMDSIPWTTLLVGVGVGTALAVTPRIAHADHKQSCYAGIVVVFDGAWHPGAVVGCR
CCHHHHHHCCHHHHHHHHCCCCEEEECCHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEE
TVNISDSNNVVGAEVNLMVAQGTIRPRVQAVVGSTSVQALIGGGYDFASSKALVGVGATG
EEEECCCCCEEEEEEEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCC
DHWLAGVDMEIAGRWTAYGGASTLGRYHSNSHPADPAPAATTPTGNNDAPPPSGNNTPPS
CCEEECCCEEECCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KPSPTPAPAPGASPSPGPTPAPTPSPGPSPSPTPSPSPTPSPTPTPAPTPTPSPSPVPSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CGSCHGGGHHHGHDHDHDHDHDHSGDHDHGGDRNHGGDHNHGGDGSHGGDHDHGGDGNHD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGGNSNHGGDRDHGGGGNHGGHHDHGGDGNHGGDHDHGGGGNHGGDHDHGGDGNHGGDHH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGGDDNHGGDHDHGGDGNHGGDHDHGGGGTHGGDHDRGGEGGHD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8458832 [H]