Click here to switch to the map view.

The map label for this gene is ybhP [H]

Identifier: 187927447

GI number: 187927447

Start: 365010

End: 365756

Strand: Direct

Name: ybhP [H]

Synonym: Rpic_0344

Alternate gene names: 187927447

Gene position: 365010-365756 (Clockwise)

Preceding gene: 187927446

Following gene: 187927448

Centisome position: 9.26

GC content: 63.99

Gene sequence:

>747_bases
ATGCTTCGTTTGCGCGTTGCCACCTACAACATCCACAAGGGCGTGACAGGCATTGCGCGGCGCGTGCGCGTGCATGACGT
GCGGCAGGGCCTGCATAGCATGGACGCCGATATCGTCTTCCTGCAGGAAGTGCAGGACCGCAACGACCGCCTGGTCGCCG
CAGAACTGTTCGACCCGAATTACACGCAGCTGCGCTACCTTGCGACGGACGTCTATCCGCACACCGTCTATGGCCGCAAT
GCCGTCTACGAGCACGGGCATCACGGCAACGCCATTCTGTCGCGGTTTCCGATCCTGCTGTCGGAAAACTTGGATATCTC
CGACCACCGTTTCGAGCAGCGCGGACTGCTGCACGCCGTGACCGATCTCGGCTTCGGCGAAGTGCACCTGCTGTGTGCAC
ACTTCGGCCTGTTCGCCCGCAGCCGGCAGCGGCAGGCGGAGGCGCTCGTCGATCGCGTGCGTTCGGTCGTGCCACCCGAT
GCGCCGCTCGTGGTGGCGGGCGATTTCAACGATTGGAACAACCGGCTCGATCGCACGATTTGCCAAGCGCTGGGGGCGAC
CGAAGTGGCCGACAAGGCCGCCAACGCGCGCCCGGTGCGCACCTTCCCGAGCCACATGCCGTGGTTGCGTCTAGACCGCA
TCTACGTACGCGGTTTCGATATTGAACGTGCGCATGCGCTGACCGGCCGCGAATGGGCGCAGCGCTCCGATCACGTTCCC
CTGCTAGCTGAACTGGCGCATCCATGA

Upstream 100 bases:

>100_bases
TGCTTCTCGCGCAGCAACGCCGAGGCCATCCTGCAGTTGCCCGAGCGCCTCGCTGCCTATCATGCCCGTCAGGCGGCTCT
GACAAAGGACCAGGCCTGAC

Downstream 100 bases:

>100_bases
GGGTCGTGCGCGATGCGGGTCCGCTGCGCTCGGAGTGGCGGCGGGGTAAGCCCCTGCCGGGCAACGACGTCGACCTGCTG
TGCGGTGGCGCCGAGTTCTT

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLRLRVATYNIHKGVTGIARRVRVHDVRQGLHSMDADIVFLQEVQDRNDRLVAAELFDPNYTQLRYLATDVYPHTVYGRN
AVYEHGHHGNAILSRFPILLSENLDISDHRFEQRGLLHAVTDLGFGEVHLLCAHFGLFARSRQRQAEALVDRVRSVVPPD
APLVVAGDFNDWNNRLDRTICQALGATEVADKAANARPVRTFPSHMPWLRLDRIYVRGFDIERAHALTGREWAQRSDHVP
LLAELAHP

Sequences:

>Translated_248_residues
MLRLRVATYNIHKGVTGIARRVRVHDVRQGLHSMDADIVFLQEVQDRNDRLVAAELFDPNYTQLRYLATDVYPHTVYGRN
AVYEHGHHGNAILSRFPILLSENLDISDHRFEQRGLLHAVTDLGFGEVHLLCAHFGLFARSRQRQAEALVDRVRSVVPPD
APLVVAGDFNDWNNRLDRTICQALGATEVADKAANARPVRTFPSHMPWLRLDRIYVRGFDIERAHALTGREWAQRSDHVP
LLAELAHP
>Mature_248_residues
MLRLRVATYNIHKGVTGIARRVRVHDVRQGLHSMDADIVFLQEVQDRNDRLVAAELFDPNYTQLRYLATDVYPHTVYGRN
AVYEHGHHGNAILSRFPILLSENLDISDHRFEQRGLLHAVTDLGFGEVHLLCAHFGLFARSRQRQAEALVDRVRSVVPPD
APLVVAGDFNDWNNRLDRTICQALGATEVADKAANARPVRTFPSHMPWLRLDRIYVRGFDIERAHALTGREWAQRSDHVP
LLAELAHP

Specific function: Unknown

COG id: COG3568

COG function: function code R; Metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787008, Length=246, Percent_Identity=39.8373983739837, Blast_Score=168, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 28268; Mature: 28268

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLRVATYNIHKGVTGIARRVRVHDVRQGLHSMDADIVFLQEVQDRNDRLVAAELFDPN
CEEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCCEEEEEECCCC
YTQLRYLATDVYPHTVYGRNAVYEHGHHGNAILSRFPILLSENLDISDHRFEQRGLLHAV
HHHHHHHHHHCCCCEECCCCCHHCCCCCCCHHHHHCCHHHCCCCCCCHHHHHHHHHHHHH
TDLGFGEVHLLCAHFGLFARSRQRQAEALVDRVRSVVPPDAPLVVAGDFNDWNNRLDRTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
CQALGATEVADKAANARPVRTFPSHMPWLRLDRIYVRGFDIERAHALTGREWAQRSDHVP
HHHCCCHHHHHHHCCCCCCCCCCCCCCHHEECEEEEECCCCHHHHHHCCHHHHHCCCCCC
LLAELAHP
HHHHCCCC
>Mature Secondary Structure
MLRLRVATYNIHKGVTGIARRVRVHDVRQGLHSMDADIVFLQEVQDRNDRLVAAELFDPN
CEEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCCEEEEEECCCC
YTQLRYLATDVYPHTVYGRNAVYEHGHHGNAILSRFPILLSENLDISDHRFEQRGLLHAV
HHHHHHHHHHCCCCEECCCCCHHCCCCCCCHHHHHCCHHHCCCCCCCHHHHHHHHHHHHH
TDLGFGEVHLLCAHFGLFARSRQRQAEALVDRVRSVVPPDAPLVVAGDFNDWNNRLDRTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
CQALGATEVADKAANARPVRTFPSHMPWLRLDRIYVRGFDIERAHALTGREWAQRSDHVP
HHHCCCHHHHHHHCCCCCCCCCCCCCCHHEECEEEEECCCCHHHHHHCCHHHHHCCCCCC
LLAELAHP
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]