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The map label for this gene is 187927336

Identifier: 187927336

GI number: 187927336

Start: 242688

End: 243299

Strand: Direct

Name: 187927336

Synonym: Rpic_0229

Alternate gene names: NA

Gene position: 242688-243299 (Clockwise)

Preceding gene: 187927335

Following gene: 187927339

Centisome position: 6.16

GC content: 63.07

Gene sequence:

>612_bases
ATGACCATGCTCTCTTTCCGATACTTCCGCGCCGCGCTGTTCGCCATGCTGGCCGTCGCCGTGCTGGCGCTCGCGGCGTG
CAGCGACAAGCCGGCCTTCAAGAACCTCGACATCACCGGATCCAAGAGCTTCGGCACCGATTTCTCGTTGACCGATCACA
CCGGCAAGCGCCGCACGCTCGAAGATTTCCGCGGCAAGGTCGTCGTCATGTTCTTCGGTTACACGCATTGCCCCGATGTC
TGCCCGACCACGCTGGCTGAGCTGCGCGCCGTGATGGATACCCTCGGCAAAGACGCCGACCGCGTCCAGGTCCTGTTCGT
CACCGTCGACCCGGAGCGCGATACGCAAGACCTGCTGGCCAAGTACGTGCCCGCGTTCGATCCGCGCTTCATCGGCCTGC
GTCCGGCCAACGAGACTGAACTGAAGAAGGTCGCGTCCGACTTCAAGGTGTTCTACAGCAAGGTGCCGGGCAGCTCGCCC
GACAACTACACCATGGATCACACCGCCGGCAGCTACATGTTCGATCCGAAGGGCAACCTGCGCCTGTTCATCAAGCACGG
CCAGGGCCCGGAGCCGATCGCGCACGACATCAAGCAACTGCTGGCCGACTGA

Upstream 100 bases:

>100_bases
GTTTGGCCCGGCGCTTACGCAAAGCGCGGCGCTGTGACGCACAGGGGCGCCAGCGAGCATGTGCTGTTGGCGGTACGCTA
GGCGGTCTGCTTCCAACACA

Downstream 100 bases:

>100_bases
TCTTCCGCCACCGCCCAAAGAAAAAGCCCGCCAATTTGGCGGGCTTTTCATTGCAGGGCGGGCAGCTTAGGCGAAGGCCT
GCAGCGCACCCTTCATCTTT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTMLSFRYFRAALFAMLAVAVLALAACSDKPAFKNLDITGSKSFGTDFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDV
CPTTLAELRAVMDTLGKDADRVQVLFVTVDPERDTQDLLAKYVPAFDPRFIGLRPANETELKKVASDFKVFYSKVPGSSP
DNYTMDHTAGSYMFDPKGNLRLFIKHGQGPEPIAHDIKQLLAD

Sequences:

>Translated_203_residues
MTMLSFRYFRAALFAMLAVAVLALAACSDKPAFKNLDITGSKSFGTDFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDV
CPTTLAELRAVMDTLGKDADRVQVLFVTVDPERDTQDLLAKYVPAFDPRFIGLRPANETELKKVASDFKVFYSKVPGSSP
DNYTMDHTAGSYMFDPKGNLRLFIKHGQGPEPIAHDIKQLLAD
>Mature_202_residues
TMLSFRYFRAALFAMLAVAVLALAACSDKPAFKNLDITGSKSFGTDFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVC
PTTLAELRAVMDTLGKDADRVQVLFVTVDPERDTQDLLAKYVPAFDPRFIGLRPANETELKKVASDFKVFYSKVPGSSPD
NYTMDHTAGSYMFDPKGNLRLFIKHGQGPEPIAHDIKQLLAD

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=158, Percent_Identity=35.4430379746835, Blast_Score=117, Evalue=5e-27,
Organism=Homo sapiens, GI281182722, Length=158, Percent_Identity=35.4430379746835, Blast_Score=117, Evalue=5e-27,
Organism=Homo sapiens, GI281182716, Length=158, Percent_Identity=35.4430379746835, Blast_Score=117, Evalue=5e-27,
Organism=Homo sapiens, GI153791313, Length=158, Percent_Identity=35.4430379746835, Blast_Score=117, Evalue=5e-27,
Organism=Homo sapiens, GI4759068, Length=142, Percent_Identity=39.4366197183099, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17531419, Length=163, Percent_Identity=31.2883435582822, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6319498, Length=143, Percent_Identity=38.4615384615385, Blast_Score=106, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=143, Percent_Identity=34.2657342657343, Blast_Score=93, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=39.8601398601399, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22612; Mature: 22481

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMLSFRYFRAALFAMLAVAVLALAACSDKPAFKNLDITGSKSFGTDFSLTDHTGKRRTL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCH
EDFRGKVVVMFFGYTHCPDVCPTTLAELRAVMDTLGKDADRVQVLFVTVDPERDTQDLLA
HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHH
KYVPAFDPRFIGLRPANETELKKVASDFKVFYSKVPGSSPDNYTMDHTAGSYMFDPKGNL
HHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEECCCCCE
RLFIKHGQGPEPIAHDIKQLLAD
EEEEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TMLSFRYFRAALFAMLAVAVLALAACSDKPAFKNLDITGSKSFGTDFSLTDHTGKRRTL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCH
EDFRGKVVVMFFGYTHCPDVCPTTLAELRAVMDTLGKDADRVQVLFVTVDPERDTQDLLA
HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHH
KYVPAFDPRFIGLRPANETELKKVASDFKVFYSKVPGSSPDNYTMDHTAGSYMFDPKGNL
HHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEECCCCCE
RLFIKHGQGPEPIAHDIKQLLAD
EEEEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]