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The map label for this gene is yddE [C]

Identifier: 187927201

GI number: 187927201

Start: 108707

End: 109564

Strand: Direct

Name: yddE [C]

Synonym: Rpic_0091

Alternate gene names: 187927201

Gene position: 108707-109564 (Clockwise)

Preceding gene: 187927200

Following gene: 187927206

Centisome position: 2.76

GC content: 67.13

Gene sequence:

>858_bases
ATGTCGCGCTACGCCTTCCGCCTGCTCAACGTCTTTGCCGAATCCACTTTTGGCGGCAACCAGCTCGCCGTGTTTGAAGA
CGGGCACGGTCTGGACGACGCCACCATGCAGGCCATCGGACGCCAGTTCAACCTCTCCGAAATCACCTTCATCTTTCCCG
ATGAGGCCGACGGCGCCACGGCGCGTTTCCGCATCTTCACGCCCGATTACGAGATGCCGTTTGCCGGCCACCCGTCGCTG
GGGACCGCGCAGGTAGTGCGCGAGCTGTATGGCCCCGGCAATGAACTGACGCTGCGTTGCCAGTCGGGCATCGTGTCGCT
GACGGCGCAGGACGAGGGGTGGTCGCTGGTGCCGCCGCGCTCCGGCGCGTTGAACACGCGCGAAGCCGATCCGGCCGTTG
CAAAGATGCTGGGGTTGGATGCGGATGCGCTGGCGGGCCCGCCGCTGTGGGTCGACGCAGGCATCGAGCAGCTGATGGTG
CCGGTCAAGACGCGCGCCGATGTGGAGCGTGCCCGGCCCGACCCGTCGGCCTTCGATGTGTGGCCGCGCAGCCGCAACGA
CGGGCGCAACGCCTACGTGTTCACCATGCCTGCGCCCGGCAGCAATGATCCGGTGGTCTCGCGCTTCTTCTTCGAATACG
GCACTGGCTTGTGGGAAGACCCGGGCACCGGTTCAGCGTGTGCCAACCTCGGCGGCTGGCTGCGCGCGACGGGCCATGCG
TTGCCGGCAACCTACCGCATCGAGCAGGGCGCAGCAGTCGGGCGCCCCTGCCACCTCACGCTGCGCGTGGATGCTGACGG
CACGATCCACGTCGGTGGCCGCGTGATCGAAATCGGCCGCGGCACGTTGACGATTTGA

Upstream 100 bases:

>100_bases
AAACTGTCTGCAAGTGTGCATGGAGACGGTGTAGCGGTGCGTTGATGATGACGCATCGCCACACCGTTTTTTTTTCTTCC
CCAACACTTCGGACGCCACC

Downstream 100 bases:

>100_bases
TCGATCGATTTGATCGATCAGGCGGCGCTGTCTGGCGCGCAGAGCTGCTTGCAGAAGAACGTCGTCCCGCAGAATGCGCC
GTCGGGCATCAGCGCGTAGT

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSRYAFRLLNVFAESTFGGNQLAVFEDGHGLDDATMQAIGRQFNLSEITFIFPDEADGATARFRIFTPDYEMPFAGHPSL
GTAQVVRELYGPGNELTLRCQSGIVSLTAQDEGWSLVPPRSGALNTREADPAVAKMLGLDADALAGPPLWVDAGIEQLMV
PVKTRADVERARPDPSAFDVWPRSRNDGRNAYVFTMPAPGSNDPVVSRFFFEYGTGLWEDPGTGSACANLGGWLRATGHA
LPATYRIEQGAAVGRPCHLTLRVDADGTIHVGGRVIEIGRGTLTI

Sequences:

>Translated_285_residues
MSRYAFRLLNVFAESTFGGNQLAVFEDGHGLDDATMQAIGRQFNLSEITFIFPDEADGATARFRIFTPDYEMPFAGHPSL
GTAQVVRELYGPGNELTLRCQSGIVSLTAQDEGWSLVPPRSGALNTREADPAVAKMLGLDADALAGPPLWVDAGIEQLMV
PVKTRADVERARPDPSAFDVWPRSRNDGRNAYVFTMPAPGSNDPVVSRFFFEYGTGLWEDPGTGSACANLGGWLRATGHA
LPATYRIEQGAAVGRPCHLTLRVDADGTIHVGGRVIEIGRGTLTI
>Mature_284_residues
SRYAFRLLNVFAESTFGGNQLAVFEDGHGLDDATMQAIGRQFNLSEITFIFPDEADGATARFRIFTPDYEMPFAGHPSLG
TAQVVRELYGPGNELTLRCQSGIVSLTAQDEGWSLVPPRSGALNTREADPAVAKMLGLDADALAGPPLWVDAGIEQLMVP
VKTRADVERARPDPSAFDVWPRSRNDGRNAYVFTMPAPGSNDPVVSRFFFEYGTGLWEDPGTGSACANLGGWLRATGHAL
PATYRIEQGAAVGRPCHLTLRVDADGTIHVGGRVIEIGRGTLTI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=266, Percent_Identity=27.4436090225564, Blast_Score=82, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321818, Length=241, Percent_Identity=26.1410788381743, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30726; Mature: 30595

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYAFRLLNVFAESTFGGNQLAVFEDGHGLDDATMQAIGRQFNLSEITFIFPDEADGAT
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCE
ARFRIFTPDYEMPFAGHPSLGTAQVVRELYGPGNELTLRCQSGIVSLTAQDEGWSLVPPR
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCEECCCC
SGALNTREADPAVAKMLGLDADALAGPPLWVDAGIEQLMVPVKTRADVERARPDPSAFDV
CCCCCCCCCCHHHHHHHCCCHHHHCCCCEEECCCHHHHEECCHHHCCHHHCCCCCCCEEC
WPRSRNDGRNAYVFTMPAPGSNDPVVSRFFFEYGTGLWEDPGTGSACANLGGWLRATGHA
CCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHEECCCC
LPATYRIEQGAAVGRPCHLTLRVDADGTIHVGGRVIEIGRGTLTI
CCEEEEECCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCEECC
>Mature Secondary Structure 
SRYAFRLLNVFAESTFGGNQLAVFEDGHGLDDATMQAIGRQFNLSEITFIFPDEADGAT
CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCE
ARFRIFTPDYEMPFAGHPSLGTAQVVRELYGPGNELTLRCQSGIVSLTAQDEGWSLVPPR
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCEECCCC
SGALNTREADPAVAKMLGLDADALAGPPLWVDAGIEQLMVPVKTRADVERARPDPSAFDV
CCCCCCCCCCHHHHHHHCCCHHHHCCCCEEECCCHHHHEECCHHHCCHHHCCCCCCCEEC
WPRSRNDGRNAYVFTMPAPGSNDPVVSRFFFEYGTGLWEDPGTGSACANLGGWLRATGHA
CCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHEECCCC
LPATYRIEQGAAVGRPCHLTLRVDADGTIHVGGRVIEIGRGTLTI
CCEEEEECCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]