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The map label for this gene is ygfF [C]

Identifier: 187927159

GI number: 187927159

Start: 61653

End: 62471

Strand: Direct

Name: ygfF [C]

Synonym: Rpic_0049

Alternate gene names: 187927159

Gene position: 61653-62471 (Clockwise)

Preceding gene: 187927157

Following gene: 187927160

Centisome position: 1.56

GC content: 68.38

Gene sequence:

>819_bases
ATGGCGCAGACGCTCAACCAGTCAACTGCGGAATCGACCGCAGAATCCGCTACACAGCAGCGCATCGCTCTCGTCACAGG
CGCAGGCCGTCGCGTGGGGCGCGTCATTGCCCTGGCCCTGGCCCGCCACGGCTGGGATGTGGCAGTGCATTGCCACCGCT
CGCGCACGGAGGCCGACGCCGTGGCCGCCGAGATCACTGCCATGGGCCGGCGCGCCGCCGTGCTGCAGGCCGACCTCTCG
GACGAAGCTGCCGCCGGCCGCCTGATCGCCGATTGCAGCGCTGCACTGGGTACGCCCACGTGCCTGGTCAACAACGCGTC
GCTGTTCCAGTACGACGTCGCGACCAGCTTCAGCTATGCGTCGCTCGATACGCACATGCGCACCAACGTGGCGGCGCCGC
TGCTGCTGTCGCGCGAGCTGCACCGTGCGCTGACTGCCGATGGCGCCGAGCACCGCGGCGTCGTCATCAATCTGCTCGAC
CAGAAGCTCGATAACCTGAACCCGGATTTCCTCTCTTACACGTTGTCGAAGGCGGCGCTGTCGACCGCCACGATGCAGCT
TGCGCAGGCGCTGGCGCCCGCGCTGCGCGTGGTGGGCGTGGCGCCGGGCATCACGATGGTGTCGGGCGACCAGTCGCAAG
GCGGGTTTGCACGCGCGCACCAGATGACGCCGCTGGGCCAGTCGTCCACGCCGGAAGACATTGCCGAGGCGGTGTGCTAC
CTCGCCACCGCCCGCGCCGTCACCGGCACCACGCTGTTCGTCGACGGAGGCCAGCACCTGATGCCGCTGGCACGCGACGT
GATGTTCCTGACTGAATAA

Upstream 100 bases:

>100_bases
GGCGTCGGCGATCACGGCGAACAGGTGCGCGGACTGCGCCTGCGCCGCCTCGTTGGGAAGCGGTAAACTCACGGTTTTGC
TCATCGGCGAATTGTAAACA

Downstream 100 bases:

>100_bases
ACAACTCCTCCCCCGGACGCTCCCATGCTTTCCCTGCTATCCCACCCGCGCCTGTCGCACTGCCGCCGCATGTTCCTGCG
CAACTACGAAGTGCAGATCA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MAQTLNQSTAESTAESATQQRIALVTGAGRRVGRVIALALARHGWDVAVHCHRSRTEADAVAAEITAMGRRAAVLQADLS
DEAAAGRLIADCSAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRTNVAAPLLLSRELHRALTADGAEHRGVVINLLD
QKLDNLNPDFLSYTLSKAALSTATMQLAQALAPALRVVGVAPGITMVSGDQSQGGFARAHQMTPLGQSSTPEDIAEAVCY
LATARAVTGTTLFVDGGQHLMPLARDVMFLTE

Sequences:

>Translated_272_residues
MAQTLNQSTAESTAESATQQRIALVTGAGRRVGRVIALALARHGWDVAVHCHRSRTEADAVAAEITAMGRRAAVLQADLS
DEAAAGRLIADCSAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRTNVAAPLLLSRELHRALTADGAEHRGVVINLLD
QKLDNLNPDFLSYTLSKAALSTATMQLAQALAPALRVVGVAPGITMVSGDQSQGGFARAHQMTPLGQSSTPEDIAEAVCY
LATARAVTGTTLFVDGGQHLMPLARDVMFLTE
>Mature_271_residues
AQTLNQSTAESTAESATQQRIALVTGAGRRVGRVIALALARHGWDVAVHCHRSRTEADAVAAEITAMGRRAAVLQADLSD
EAAAGRLIADCSAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRTNVAAPLLLSRELHRALTADGAEHRGVVINLLDQ
KLDNLNPDFLSYTLSKAALSTATMQLAQALAPALRVVGVAPGITMVSGDQSQGGFARAHQMTPLGQSSTPEDIAEAVCYL
ATARAVTGTTLFVDGGQHLMPLARDVMFLTE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=29.0836653386454, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=30.2040816326531, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=31.7460317460317, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.0487804878049, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=28.968253968254, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787891, Length=243, Percent_Identity=26.3374485596708, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=26.2948207171315, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=26.2172284644195, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=273, Percent_Identity=25.6410256410256, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=28.8537549407115, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=29.7709923664122, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=28.125, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=27.9527559055118, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28583; Mature: 28452

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTLNQSTAESTAESATQQRIALVTGAGRRVGRVIALALARHGWDVAVHCHRSRTEADA
CCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
VAAEITAMGRRAAVLQADLSDEAAAGRLIADCSAALGTPTCLVNNASLFQYDVATSFSYA
HHHHHHHHCCHHEEEECCCCCHHHHCHHHHHHHHHCCCCEEEECCCHHEEEEHHCCCCHH
SLDTHMRTNVAAPLLLSRELHRALTADGAEHRGVVINLLDQKLDNLNPDFLSYTLSKAAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHH
STATMQLAQALAPALRVVGVAPGITMVSGDQSQGGFARAHQMTPLGQSSTPEDIAEAVCY
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH
LATARAVTGTTLFVDGGQHLMPLARDVMFLTE
HHHHHHHCCEEEEEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQTLNQSTAESTAESATQQRIALVTGAGRRVGRVIALALARHGWDVAVHCHRSRTEADA
CCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
VAAEITAMGRRAAVLQADLSDEAAAGRLIADCSAALGTPTCLVNNASLFQYDVATSFSYA
HHHHHHHHCCHHEEEECCCCCHHHHCHHHHHHHHHCCCCEEEECCCHHEEEEHHCCCCHH
SLDTHMRTNVAAPLLLSRELHRALTADGAEHRGVVINLLDQKLDNLNPDFLSYTLSKAAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHH
STATMQLAQALAPALRVVGVAPGITMVSGDQSQGGFARAHQMTPLGQSSTPEDIAEAVCY
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH
LATARAVTGTTLFVDGGQHLMPLARDVMFLTE
HHHHHHHCCEEEEEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]