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The map label for this gene is rimM [H]

Identifier: 187918552

GI number: 187918552

Start: 743509

End: 744009

Strand: Direct

Name: rimM [H]

Synonym: BH0697

Alternate gene names: 187918552

Gene position: 743509-744009 (Clockwise)

Preceding gene: 187918551

Following gene: 187918553

Centisome position: 80.61

GC content: 28.74

Gene sequence:

>501_bases
ATGTTTGTAAAAGGCATAATATTGTCATCTTATGGAATTAATGGATATGCTAAAGTTAAGAGCATATCCAATAATTTTAA
TGATTTCCTTGATTTAAAGGGTAGTAAGTTAGTTTTAAAAAAGGAATGTTGTTCGTCAATTGAAGTTAAAGTTGAAGACG
TATCTTTAATGAATAAGTCATTATTATTGAAATTTGAAGAATTTGATGCCCCCGAGCCTATTAAGGATTTAATTGGTTTT
GAGTTATGGGTAAATGATGAATTTGCATCTAAATTGGAAGAAGATGAGTATTACTTTGGCGAGCTTATTGGTTATAAGCT
TATTAATAATGGACAGGAATTAGGAGTTGTTGTATCTTTTTATGAGTGTGTAAAGTCGATTCTTCTTGAGGTTAAAGTTG
GAAGTAAATTGTTTTTTGTTCCCTTTTTAAATGTTTATCTTGGAGATATTAATAGGGAATTGAAAACTATTGAGCTTAAG
GTATTAGATCTCTTAAAATGA

Upstream 100 bases:

>100_bases
TGGAAGAAGAGGGCGCATTGCAAGGGCTATTAGGACACTTCTTAGTGCTTGTGCTGCTAAAACAAATAGGAGAGTTCAGC
TAGAAATTTTGGACTAATTT

Downstream 100 bases:

>100_bases
AAATTACGATTCTCTCTTTATTTCCTTCAATCATTACCCCATTTTTTGAAAATTCAATAATGAAAAAAGTTGTAGATAGA
GGTATCATAAGTTATGAGGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MFVKGIILSSYGINGYAKVKSISNNFNDFLDLKGSKLVLKKECCSSIEVKVEDVSLMNKSLLLKFEEFDAPEPIKDLIGF
ELWVNDEFASKLEEDEYYFGELIGYKLINNGQELGVVVSFYECVKSILLEVKVGSKLFFVPFLNVYLGDINRELKTIELK
VLDLLK

Sequences:

>Translated_166_residues
MFVKGIILSSYGINGYAKVKSISNNFNDFLDLKGSKLVLKKECCSSIEVKVEDVSLMNKSLLLKFEEFDAPEPIKDLIGF
ELWVNDEFASKLEEDEYYFGELIGYKLINNGQELGVVVSFYECVKSILLEVKVGSKLFFVPFLNVYLGDINRELKTIELK
VLDLLK
>Mature_166_residues
MFVKGIILSSYGINGYAKVKSISNNFNDFLDLKGSKLVLKKECCSSIEVKVEDVSLMNKSLLLKFEEFDAPEPIKDLIGF
ELWVNDEFASKLEEDEYYFGELIGYKLINNGQELGVVVSFYECVKSILLEVKVGSKLFFVPFLNVYLGDINRELKTIELK
VLDLLK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18914; Mature: 18914

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVKGIILSSYGINGYAKVKSISNNFNDFLDLKGSKLVLKKECCSSIEVKVEDVSLMNKS
CCEEEEEEECCCCCCCEEHHHHHCCHHHHHHCCCCEEEEHHHCCCCCEEEEHHHHHHHHH
LLLKFEEFDAPEPIKDLIGFELWVNDEFASKLEEDEYYFGELIGYKLINNGQELGVVVSF
HEEEEHHCCCCCCHHHHCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
YECVKSILLEVKVGSKLFFVPFLNVYLGDINRELKTIELKVLDLLK
HHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFVKGIILSSYGINGYAKVKSISNNFNDFLDLKGSKLVLKKECCSSIEVKVEDVSLMNKS
CCEEEEEEECCCCCCCEEHHHHHCCHHHHHHCCCCEEEEHHHCCCCCEEEEHHHHHHHHH
LLLKFEEFDAPEPIKDLIGFELWVNDEFASKLEEDEYYFGELIGYKLINNGQELGVVVSF
HEEEEHHCCCCCCHHHHCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
YECVKSILLEVKVGSKLFFVPFLNVYLGDINRELKTIELKVLDLLK
HHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]