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The map label for this gene is secD [H]

Identifier: 187918508

GI number: 187918508

Start: 696980

End: 698752

Strand: Direct

Name: secD [H]

Synonym: BH0652

Alternate gene names: 187918508

Gene position: 696980-698752 (Clockwise)

Preceding gene: 187918507

Following gene: 187918509

Centisome position: 75.57

GC content: 33.05

Gene sequence:

>1773_bases
GTGCTATTTATGAATAAAGTCTCTAAATTTATATTAATACTATTTGTGACATCATTTGCTTATCTTTTAATATTTCCTAC
TCTAAAGTGGTATTTTTTTACTAATGATGGGGATAGGAAAATTAGTTCGTATTCAAAAGAGGCTTTAAGGGATTATTCTA
AGAGTAAGGCCTTGAGTTCTCTTGTAAAACTTAGGGAATTGTATCAAAGAGATCCCAATGCTCAAATTCCAGATGATTTG
AAATATTTAATTCCAGTTGCTAAGAATAACTATAGAATTTATGGAAAAGAGCCTCCCAAATTCTTTAATAATGTAAAAGT
CTTAAGAGATGGATTTTTAACAGATTCTGATATTGAAGAGCTTAGTCTTGAAATTTATAGGTATTATGAAGATATAAAGA
GGAATAAAAGCAAAATAATACAACTTGGACTTGATTTGTCTGGGGGAATGAGTATTACTATTTCTCTTGATTACTCAGGG
CTTGAGCAGAAATTAGGGAGAACTTTGAGTGCTCTAGAAAGGGAGGAAGCTCTTGGGCGTACAATTCAGATACTTAAAGA
GAGGGTAGACACCTTTGGGCTTACAGAGCCTAAGATTACAAGAGAAGCAGGTGGGAATAAGATTTTCTTAGATATTCCTG
GAGAAAAGGACGAGAAGCGAGTTGATTCTCTTTTAAGTGGTAGAGGCAATTTAACCTTTTATGTGGTTGATAATGATGCT
ACCTCTGTGCTTAATGCTAAAATACTAGAAGCTGGACCTCTTTATTCGATTTCTGATATTAAGAGTAGCATGGGGCTTGG
AGATAATAAGGAAATTTTTCCATGGTATGTTAAGGATTCTTATGGTATTGATGATGAATCTAGTGTTCATTATTATGTTG
TTGATTCTAGTGTTGAGAGTTCTTTTGATGGCTCCCATATTAAGGATGCTGGGGTTTTAAATGATCACAAAACAGGTAGG
GATATAGTTACGTTTAATTTAGATAATGAGGGAAGTGAAAAATTTTTTGTCTTTACTCAAAAGAACATTGGCAAGGCTTT
AGCGGTGGTTATGGAAGGAAAAATTAAATCAGTGGCTAATATTAGTCATGCTATTGCTGGAGGAAATGTTTCAATTCAGG
GAGATTCTTTTGATAAAAGGGAAGCTAATGAGCTTGCACTTGTTTTTAAAACAGCAGCTTTTCCAGTTGAAATAAAGATA
GATGACCTAAGAGTTATTGGACCTACTATGGGAGAGAAGACAATTGCACTTGGAATAAAAGCATCTCTTCTTGCACTTGT
TTTAGTTTTTTTATTTATGTTGGCATATTACAAGATGAGTGGTTTTGTAGCGGGATTTTCATTGGTTATTTATAATCTAT
TTTTAATATTGGCAATTCTCTCGGCATTTAACTTTACTTTGACTCTTACAAGTATTGCAGGTCTTGTATTAACTATGGGC
ATGGCTGTTGATATTAATATAGTTATTTATGAGCGAATTAAGGAAGAGATTAGAAATGGGCGAAAATTTGGGAGAGCATT
TGAGGATGGATTTAAAAAAGCTTTTTGGGCAATAATGGATTCAAATGTTACAACATTTATTGCTGTGCTTTTTTTAACTC
TTCTCGGAACTGGAACTATTCAAGGTTTTGCGTGGTCTTTGTCTATAGGGATTGTGGCATCACTTTTTAGTAGTTTAATC
TTTTCAAGGTTTATTTTAGAAGTTATTATATCTTTAAGTAAAAGCAAATGTGTAAGTATCTCTTGGAGTTCAAATTATGC
AAAAAGTGTTTAA

Upstream 100 bases:

>100_bases
ATTAAAAACAAAAATTAAGGTGTTAGAAGCAAATTAATATATGACTATTAAATTAAATATTAATTTAGCATAATGTTTAA
TTTAGATTAACTTAATAAGG

Downstream 100 bases:

>100_bases
TTTTTTAAAATATGGAAATAAAGCTATAATAGTTAGTATTTGTATGATTTTTTCGGGCTTTATTTACACTTTTATGTATC
ATGATGGTTATAATTGGGGA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 590

Protein sequence:

>590_residues
MLFMNKVSKFILILFVTSFAYLLIFPTLKWYFFTNDGDRKISSYSKEALRDYSKSKALSSLVKLRELYQRDPNAQIPDDL
KYLIPVAKNNYRIYGKEPPKFFNNVKVLRDGFLTDSDIEELSLEIYRYYEDIKRNKSKIIQLGLDLSGGMSITISLDYSG
LEQKLGRTLSALEREEALGRTIQILKERVDTFGLTEPKITREAGGNKIFLDIPGEKDEKRVDSLLSGRGNLTFYVVDNDA
TSVLNAKILEAGPLYSISDIKSSMGLGDNKEIFPWYVKDSYGIDDESSVHYYVVDSSVESSFDGSHIKDAGVLNDHKTGR
DIVTFNLDNEGSEKFFVFTQKNIGKALAVVMEGKIKSVANISHAIAGGNVSIQGDSFDKREANELALVFKTAAFPVEIKI
DDLRVIGPTMGEKTIALGIKASLLALVLVFLFMLAYYKMSGFVAGFSLVIYNLFLILAILSAFNFTLTLTSIAGLVLTMG
MAVDINIVIYERIKEEIRNGRKFGRAFEDGFKKAFWAIMDSNVTTFIAVLFLTLLGTGTIQGFAWSLSIGIVASLFSSLI
FSRFILEVIISLSKSKCVSISWSSNYAKSV

Sequences:

>Translated_590_residues
MLFMNKVSKFILILFVTSFAYLLIFPTLKWYFFTNDGDRKISSYSKEALRDYSKSKALSSLVKLRELYQRDPNAQIPDDL
KYLIPVAKNNYRIYGKEPPKFFNNVKVLRDGFLTDSDIEELSLEIYRYYEDIKRNKSKIIQLGLDLSGGMSITISLDYSG
LEQKLGRTLSALEREEALGRTIQILKERVDTFGLTEPKITREAGGNKIFLDIPGEKDEKRVDSLLSGRGNLTFYVVDNDA
TSVLNAKILEAGPLYSISDIKSSMGLGDNKEIFPWYVKDSYGIDDESSVHYYVVDSSVESSFDGSHIKDAGVLNDHKTGR
DIVTFNLDNEGSEKFFVFTQKNIGKALAVVMEGKIKSVANISHAIAGGNVSIQGDSFDKREANELALVFKTAAFPVEIKI
DDLRVIGPTMGEKTIALGIKASLLALVLVFLFMLAYYKMSGFVAGFSLVIYNLFLILAILSAFNFTLTLTSIAGLVLTMG
MAVDINIVIYERIKEEIRNGRKFGRAFEDGFKKAFWAIMDSNVTTFIAVLFLTLLGTGTIQGFAWSLSIGIVASLFSSLI
FSRFILEVIISLSKSKCVSISWSSNYAKSV
>Mature_590_residues
MLFMNKVSKFILILFVTSFAYLLIFPTLKWYFFTNDGDRKISSYSKEALRDYSKSKALSSLVKLRELYQRDPNAQIPDDL
KYLIPVAKNNYRIYGKEPPKFFNNVKVLRDGFLTDSDIEELSLEIYRYYEDIKRNKSKIIQLGLDLSGGMSITISLDYSG
LEQKLGRTLSALEREEALGRTIQILKERVDTFGLTEPKITREAGGNKIFLDIPGEKDEKRVDSLLSGRGNLTFYVVDNDA
TSVLNAKILEAGPLYSISDIKSSMGLGDNKEIFPWYVKDSYGIDDESSVHYYVVDSSVESSFDGSHIKDAGVLNDHKTGR
DIVTFNLDNEGSEKFFVFTQKNIGKALAVVMEGKIKSVANISHAIAGGNVSIQGDSFDKREANELALVFKTAAFPVEIKI
DDLRVIGPTMGEKTIALGIKASLLALVLVFLFMLAYYKMSGFVAGFSLVIYNLFLILAILSAFNFTLTLTSIAGLVLTMG
MAVDINIVIYERIKEEIRNGRKFGRAFEDGFKKAFWAIMDSNVTTFIAVLFLTLLGTGTIQGFAWSLSIGIVASLFSSLI
FSRFILEVIISLSKSKCVSISWSSNYAKSV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=427, Percent_Identity=31.615925058548, Blast_Score=199, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022645 [H]

Pfam domain/function: PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65849; Mature: 65849

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFMNKVSKFILILFVTSFAYLLIFPTLKWYFFTNDGDRKISSYSKEALRDYSKSKALSS
CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LVKLRELYQRDPNAQIPDDLKYLIPVAKNNYRIYGKEPPKFFNNVKVLRDGFLTDSDIEE
HHHHHHHHHCCCCCCCCCCHHHHEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHH
LSLEIYRYYEDIKRNKSKIIQLGLDLSGGMSITISLDYSGLEQKLGRTLSALEREEALGR
HHHHHHHHHHHHHCCHHHEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
TIQILKERVDTFGLTEPKITREAGGNKIFLDIPGEKDEKRVDSLLSGRGNLTFYVVDNDA
HHHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCC
TSVLNAKILEAGPLYSISDIKSSMGLGDNKEIFPWYVKDSYGIDDESSVHYYVVDSSVES
HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCC
SFDGSHIKDAGVLNDHKTGRDIVTFNLDNEGSEKFFVFTQKNIGKALAVVMEGKIKSVAN
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHCHHHHHHH
ISHAIAGGNVSIQGDSFDKREANELALVFKTAAFPVEIKIDDLRVIGPTMGEKTIALGIK
HHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEECCEEEECCCCCCCEEEECHH
ASLLALVLVFLFMLAYYKMSGFVAGFSLVIYNLFLILAILSAFNFTLTLTSIAGLVLTMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
MAVDINIVIYERIKEEIRNGRKFGRAFEDGFKKAFWAIMDSNVTTFIAVLFLTLLGTGTI
CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
QGFAWSLSIGIVASLFSSLIFSRFILEVIISLSKSKCVSISWSSNYAKSV
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MLFMNKVSKFILILFVTSFAYLLIFPTLKWYFFTNDGDRKISSYSKEALRDYSKSKALSS
CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LVKLRELYQRDPNAQIPDDLKYLIPVAKNNYRIYGKEPPKFFNNVKVLRDGFLTDSDIEE
HHHHHHHHHCCCCCCCCCCHHHHEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHH
LSLEIYRYYEDIKRNKSKIIQLGLDLSGGMSITISLDYSGLEQKLGRTLSALEREEALGR
HHHHHHHHHHHHHCCHHHEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
TIQILKERVDTFGLTEPKITREAGGNKIFLDIPGEKDEKRVDSLLSGRGNLTFYVVDNDA
HHHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCC
TSVLNAKILEAGPLYSISDIKSSMGLGDNKEIFPWYVKDSYGIDDESSVHYYVVDSSVES
HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCC
SFDGSHIKDAGVLNDHKTGRDIVTFNLDNEGSEKFFVFTQKNIGKALAVVMEGKIKSVAN
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHCHHHHHHH
ISHAIAGGNVSIQGDSFDKREANELALVFKTAAFPVEIKIDDLRVIGPTMGEKTIALGIK
HHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEECCEEEECCCCCCCEEEECHH
ASLLALVLVFLFMLAYYKMSGFVAGFSLVIYNLFLILAILSAFNFTLTLTSIAGLVLTMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
MAVDINIVIYERIKEEIRNGRKFGRAFEDGFKKAFWAIMDSNVTTFIAVLFLTLLGTGTI
CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
QGFAWSLSIGIVASLFSSLIFSRFILEVIISLSKSKCVSISWSSNYAKSV
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]